Literature DB >> 23241977

Quantification of IncP-1 plasmid prevalence in environmental samples.

Sven Jechalke1, Simone Dealtry, Kornelia Smalla, Holger Heuer.   

Abstract

To study the role of broad-host-range IncP-1 plasmids in bacterial adaptability to irregular environmental challenges, a quantitative real-time PCR assay was developed that specifically detects the korB gene, which is conserved in all IncP-1 plasmids, in environmental samples. IncP-1 plasmid dynamics in a biopurification system for pesticide wastes were analyzed.

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Year:  2012        PMID： 23241977      PMCID： PMC3568613          DOI： 10.1128/AEM.03728-12

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  24 in total

1.  Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5'-nuclease assays.

Authors:  M T Suzuki; L T Taylor; E F DeLong
Journal:  Appl Environ Microbiol       Date:  2000-11       Impact factor: 4.792

Review 2.  Plasmids foster diversification and adaptation of bacterial populations in soil.

Authors:  Holger Heuer; Kornelia Smalla
Journal:  FEMS Microbiol Rev       Date:  2012-03-26       Impact factor: 16.408

3.  Increased abundance of IncP-1beta plasmids and mercury resistance genes in mercury-polluted river sediments: first discovery of IncP-1beta plasmids with a complex mer transposon as the sole accessory element.

Authors:  Kornelia Smalla; Anthony S Haines; Karen Jones; Ellen Krögerrecklenfort; Holger Heuer; Michael Schloter; Christopher M Thomas
Journal:  Appl Environ Microbiol       Date:  2006-09-15       Impact factor: 4.792

4.  Cultivation-independent examination of horizontal transfer and host range of an IncP-1 plasmid among gram-positive and gram-negative bacteria indigenous to the barley rhizosphere.

Authors:  Sanin Musovic; Gunnar Oregaard; Niels Kroer; Søren J Sørensen
Journal:  Appl Environ Microbiol       Date:  2006-10       Impact factor: 4.792

5.  All IncP-1 plasmid subgroups, including the novel epsilon subgroup, are prevalent in the influent of a Danish wastewater treatment plant.

Authors:  Martin Iain Bahl; Mette Burmølle; Annelein Meisner; Lars Hestbjerg Hansen; Søren J Sørensen
Journal:  Plasmid       Date:  2009-06-06       Impact factor: 3.466

Review 6.  Patchy distribution of flexible genetic elements in bacterial populations mediates robustness to environmental uncertainty.

Authors:  Holger Heuer; Zaid Abdo; Kornelia Smalla
Journal:  FEMS Microbiol Ecol       Date:  2008-07-08       Impact factor: 4.194

7.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

8.  The completely sequenced plasmid pEST4011 contains a novel IncP1 backbone and a catabolic transposon harboring tfd genes for 2,4-dichlorophenoxyacetic acid degradation.

Authors:  Eve Vedler; Merle Vahter; Ain Heinaru
Journal:  J Bacteriol       Date:  2004-11       Impact factor: 3.490

9.  Global transcription regulation of RK2 plasmids: a case study in the combined use of dynamical mathematical models and statistical inference for integration of experimental data and hypothesis exploration.

Authors:  Dorota Herman; Christopher M Thomas; Dov J Stekel
Journal:  BMC Syst Biol       Date:  2011-07-29

10.  IncP-1ε Plasmids are Important Vectors of Antibiotic Resistance Genes in Agricultural Systems: Diversification Driven by Class 1 Integron Gene Cassettes.

Authors:  Holger Heuer; Chu T T Binh; Sven Jechalke; Christoph Kopmann; Ute Zimmerling; Ellen Krögerrecklenfort; Thomas Ledger; Bernardo González; Eva Top; Kornelia Smalla
Journal:  Front Microbiol       Date:  2012-01-18       Impact factor: 5.640
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  17 in total

1.  Diversification of broad host range plasmids correlates with the presence of antibiotic resistance genes.

Authors:  Xiaobin Li; Yafei Wang; Celeste J Brown; Fei Yao; Yong Jiang; Eva M Top; Hui Li
Journal:  FEMS Microbiol Ecol       Date:  2015-12-02       Impact factor: 4.194

Review 2.  Plasmid Detection, Characterization, and Ecology.

Authors:  Kornelia Smalla; Sven Jechalke; Eva M Top
Journal:  Microbiol Spectr       Date:  2015-02

3.  Shifts in abundance and diversity of mobile genetic elements after the introduction of diverse pesticides into an on-farm biopurification system over the course of a year.

Authors:  Simone Dealtry; Peter N Holmsgaard; Vincent Dunon; Sven Jechalke; Guo-Chun Ding; Ellen Krögerrecklenfort; Holger Heuer; Lars H Hansen; Dirk Springael; Sebastian Zühlke; Søren J Sørensen; Kornelia Smalla
Journal:  Appl Environ Microbiol       Date:  2014-04-25       Impact factor: 4.792

4.  Long-Range PCR Reveals the Genetic Cargo of IncP-1 Plasmids in the Complex Microbial Community of an On-Farm Biopurification System Treating Pesticide-Contaminated Wastewater.

Authors:  Vincent Dunon; Peter N Holmsgaard; Simone Dealtry; Rob Lavigne; Søren J Sørensen; Kornelia Smalla; Eva M Top; Dirk Springael
Journal:  Appl Environ Microbiol       Date:  2021-12-08       Impact factor: 5.005

Review 5.  Strategies and approaches in plasmidome studies-uncovering plasmid diversity disregarding of linear elements?

Authors:  Julián R Dib; Martin Wagenknecht; María E Farías; Friedhelm Meinhardt
Journal:  Front Microbiol       Date:  2015-05-26       Impact factor: 5.640

Review 6.  Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution.

Authors:  Michael R Gillings; William H Gaze; Amy Pruden; Kornelia Smalla; James M Tiedje; Yong-Guan Zhu
Journal:  ISME J       Date:  2014-12-12       Impact factor: 10.302

7.  Effects of 100 years wastewater irrigation on resistance genes, class 1 integrons and IncP-1 plasmids in Mexican soil.

Authors:  Sven Jechalke; Melanie Broszat; Friederike Lang; Christina Siebe; Kornelia Smalla; Elisabeth Grohmann
Journal:  Front Microbiol       Date:  2015-03-03       Impact factor: 5.640

8.  The broad-host-range plasmid pSFA231 isolated from petroleum-contaminated sediment represents a new member of the PromA plasmid family.

Authors:  Xiaobin Li; Eva M Top; Yafei Wang; Celeste J Brown; Fei Yao; Shan Yang; Yong Jiang; Hui Li
Journal:  Front Microbiol       Date:  2015-01-12       Impact factor: 5.640

9.  Widespread dissemination of class 1 integron components in soils and related ecosystems as revealed by cultivation-independent analysis.

Authors:  Sven Jechalke; Susanne Schreiter; Birgit Wolters; Simone Dealtry; Holger Heuer; Kornelia Smalla
Journal:  Front Microbiol       Date:  2014-01-17       Impact factor: 5.640

10.  Cultivation-independent screening revealed hot spots of IncP-1, IncP-7 and IncP-9 plasmid occurrence in different environmental habitats.

Authors:  Simone Dealtry; Guo-Chun Ding; Viola Weichelt; Vincent Dunon; Andreas Schlüter; María Carla Martini; María Florencia Del Papa; Antonio Lagares; Gregory Charles Auton Amos; Elizabeth Margaret Helen Wellington; William Hugo Gaze; Detmer Sipkema; Sara Sjöling; Dirk Springael; Holger Heuer; Jan Dirk van Elsas; Christopher Thomas; Kornelia Smalla
Journal:  PLoS One       Date:  2014-02-24       Impact factor: 3.240
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