Literature DB >> 23238807

Protein prosthesis: β-peptides as reverse-turn surrogates.

Ulrich Arnold1, Bayard R Huck, Samuel H Gellman, Ronald T Raines.   

Abstract

The introduction of non-natural modules could provide unprecedented control over folding/unfolding behavior, conformational stability, and biological function of proteins. Success requires the interrogation of candidate modules in natural contexts. Here, expressed protein ligation is used to replace a reverse turn in bovine pancreatic ribonuclease (RNase A) with a synthetic β-dipeptide: β²-homoalanine-β³-homoalanine. This segment is known to adopt an unnatural reverse-turn conformation that contains a 10-membered ring hydrogen bond, but one with a donor-acceptor pattern opposite to that in the 10-membered rings of natural reverse turns. The RNase A variant has intact enzymatic activity, but unfolds more quickly and has diminished conformational stability relative to native RNase A. These data indicate that hydrogen-bonding pattern merits careful consideration in the selection of beneficial reverse-turn surrogates.
Copyright © 2012 The Protein Society.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23238807      PMCID: PMC3595457          DOI: 10.1002/pro.2208

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  33 in total

1.  Proteolytic degradation of ribonuclease A in the pretransition region of thermally and urea-induced unfolding.

Authors:  U Arnold; R Ulbrich-Hofmann
Journal:  Eur J Biochem       Date:  2001-01

Review 2.  beta-Peptides: from structure to function.

Authors:  R P Cheng; S H Gellman; W F DeGrado
Journal:  Chem Rev       Date:  2001-10       Impact factor: 60.622

3.  The beta-peptide hairpin in solution: conformational study of a beta-hexapeptide in methanol by NMR spectroscopy and MD simulation.

Authors:  X Daura; K Gademann; H Schäfer; B Jaun; D Seebach; W F van Gunsteren
Journal:  J Am Chem Soc       Date:  2001-03-14       Impact factor: 15.419

4.  Ribonuclease A.

Authors:  Ronald T. Raines
Journal:  Chem Rev       Date:  1998-05-07       Impact factor: 60.622

5.  Protein prosthesis: a nonnatural residue accelerates folding and increases stability.

Authors:  Ulrich Arnold; Matthew P Hinderaker; Jens Köditz; Ralph Golbik; Renate Ulbrich-Hofmann; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2003-06-25       Impact factor: 15.419

6.  Cis proline mutants of ribonuclease A. I. Thermal stability.

Authors:  D A Schultz; R L Baldwin
Journal:  Protein Sci       Date:  1992-07       Impact factor: 6.725

7.  Peptide folding induces high and selective affinity of a linear and small beta-peptide to the human somatostatin receptor 4.

Authors:  K Gademann; T Kimmerlin; D Hoyer; D Seebach
Journal:  J Med Chem       Date:  2001-07-19       Impact factor: 7.446

8.  Hypersensitive substrate for ribonucleases.

Authors:  B R Kelemen; T A Klink; M A Behlke; S R Eubanks; P A Leland; R T Raines
Journal:  Nucleic Acids Res       Date:  1999-09-15       Impact factor: 16.971

9.  Protein prosthesis: a semisynthetic enzyme with a beta-peptide reverse turn.

Authors:  Ulrich Arnold; Matthew P Hinderaker; Bradley L Nilsson; Bayard R Huck; Samuel H Gellman; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2002-07-24       Impact factor: 15.419

10.  Semisynthesis of ribonuclease A using intein-mediated protein ligation.

Authors:  Ulrich Arnold; Matthew P Hinderaker; Ronald T Raines
Journal:  ScientificWorldJournal       Date:  2002-06-28
View more
  6 in total

1.  Evidence for small-molecule-mediated loop stabilization in the structure of the isolated Pin1 WW domain.

Authors:  David E Mortenson; Dale F Kreitler; Hyun Gi Yun; Samuel H Gellman; Katrina T Forest
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-11-19

Review 2.  Chemoenzymatic Semisynthesis of Proteins.

Authors:  Robert E Thompson; Tom W Muir
Journal:  Chem Rev       Date:  2019-11-27       Impact factor: 60.622

3.  Expanding the Scope of Protein Synthesis Using Modified Ribosomes.

Authors:  Larisa M Dedkova; Sidney M Hecht
Journal:  J Am Chem Soc       Date:  2019-04-05       Impact factor: 15.419

4.  Replacing a single atom accelerates the folding of a protein and increases its thermostability.

Authors:  Ulrich Arnold; Ronald T Raines
Journal:  Org Biomol Chem       Date:  2016-07-12       Impact factor: 3.876

5.  Folding Thermodynamics of Protein-Like Oligomers with Heterogeneous Backbones.

Authors:  Zachary E Reinert; W Seth Horne
Journal:  Chem Sci       Date:  2014-08-01       Impact factor: 9.825

6.  Mini-ISES identifies promising carbafructopyranose-based salens for asymmetric catalysis: Tuning ligand shape via the anomeric effect.

Authors:  Kannan R Karukurichi; Xiang Fei; Robert A Swyka; Sylvain Broussy; Weijun Shen; Sangeeta Dey; Sandip K Roy; David B Berkowitz
Journal:  Sci Adv       Date:  2015-07-10       Impact factor: 14.136

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.