Literature DB >> 23230764

Multi-path variational transition state theory for chemical reaction rates of complex polyatomic species: ethanol + OH reactions.

Jingjing Zheng1, Donald G Truhlar.   

Abstract

Complex molecules often have many structures (conformations) of the reactants and the transition states, and these structures may be connected by coupled-mode torsions and pseudorotations; some but not all structures may have hydrogen bonds in the transition state or reagents. A quantitative theory of the reaction rates of complex molecules must take account of these structures, their coupled-mode nature, their qualitatively different character, and the possibility of merging reaction paths at high temperature. We have recently developed a coupled-mode theory called multi-structural variational transition state theory (MS-VTST) and an extension, called multi-path variational transition state theory (MP-VTST), that includes a treatment of the differences in the multi-dimensional tunneling paths and their contributions to the reaction rate. The MP-VTST method was presented for unimolecular reactions in the original paper and has now been extended to bimolecular reactions. The MS-VTST and MP-VTST formulations of variational transition state theory include multi-faceted configuration-space dividing surfaces to define the variational transition state. They occupy an intermediate position between single-conformation variational transition state theory (VTST), which has been used successfully for small molecules, and ensemble-averaged variational transition state theory (EA-VTST), which has been used successfully for enzyme kinetics. The theories are illustrated and compared here by application to three thermal rate constants for reactions of ethanol with hydroxyl radical--reactions with 4, 6, and 14 saddle points.

Entities:  

Year:  2012        PMID: 23230764     DOI: 10.1039/c2fd20012k

Source DB:  PubMed          Journal:  Faraday Discuss        ISSN: 1359-6640            Impact factor:   4.008


  10 in total

1.  The enzymatic reaction catalyzed by lactate dehydrogenase exhibits one dominant reaction path.

Authors:  Jean E Masterson; Steven D Schwartz
Journal:  Chem Phys       Date:  2014-10-16       Impact factor: 2.348

2.  Computational Kinetics by Variational Transition-State Theory with Semiclassical Multidimensional Tunneling: Direct Dynamics Rate Constants for the Abstraction of H from CH3OH by Triplet Oxygen Atoms.

Authors:  Rubén Meana-Pañeda; Xuefei Xu; He Ma; Donald G Truhlar
Journal:  J Phys Chem A       Date:  2017-02-15       Impact factor: 2.781

Review 3.  Transition state theory for enzyme kinetics.

Authors:  Donald G Truhlar
Journal:  Arch Biochem Biophys       Date:  2015-05-23       Impact factor: 4.013

4.  Barrierless association of CF2 and dissociation of C2F4 by variational transition-state theory and system-specific quantum Rice-Ramsperger-Kassel theory.

Authors:  Junwei Lucas Bao; Xin Zhang; Donald G Truhlar
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-10       Impact factor: 11.205

5.  Direct dynamics simulations of the hydrogen abstraction reaction Cl + CF₃CF₂CH₂OH.

Authors:  Ang-Yang Yu; Hong-Xing Zhang
Journal:  J Mol Model       Date:  2013-08-14       Impact factor: 1.810

6.  Loss of Hyperconjugative Effects Drives Hydride Transfer during Dihydrofolate Reductase Catalysis.

Authors:  Antonio Angelastro; J Javier Ruiz-Pernía; Iñaki Tuñón; Vicent Moliner; Louis Y P Luk; Rudolf K Allemann
Journal:  ACS Catal       Date:  2019-09-23       Impact factor: 13.084

7.  Anharmonic kinetics of the cyclopentane reaction with hydroxyl radical.

Authors:  Junjun Wu; Lu Gem Gao; Wei Ren; Donald G Truhlar
Journal:  Chem Sci       Date:  2020-01-25       Impact factor: 9.825

8.  Gas phase kinetics of the OH + CH3CH2OH reaction at temperatures of the interstellar medium (T = 21-107 K).

Authors:  A J Ocaña; S Blázquez; B Ballesteros; A Canosa; M Antiñolo; J Albaladejo; E Jiménez
Journal:  Phys Chem Chem Phys       Date:  2018-02-21       Impact factor: 3.676

9.  Multi-path variational transition state theory for chiral molecules: the site-dependent kinetics for abstraction of hydrogen from 2-butanol by hydroperoxyl radical, analysis of hydrogen bonding in the transition state, and dramatic temperature dependence of the activation energy.

Authors:  Junwei Lucas Bao; Rubén Meana-Pañeda; Donald G Truhlar
Journal:  Chem Sci       Date:  2015-06-16       Impact factor: 9.825

10.  Role of Microsolvation and Quantum Effects in the Accurate Prediction of Kinetic Isotope Effects: The Case of Hydrogen Atom Abstraction in Ethanol by Atomic Hydrogen in Aqueous Solution.

Authors:  Suraj Kannath; Paweł Adamczyk; David Ferro-Costas; Antonio Fernández-Ramos; Dan Thomas Major; Agnieszka Dybala-Defratyka
Journal:  J Chem Theory Comput       Date:  2020-01-21       Impact factor: 6.006

  10 in total

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