Literature DB >> 23230388

ELECTRON DETACHMENT DISSOCIATION OF SYNTHETIC HEPARAN SULFATE GLYCOSAMINOGLYCAN TETRASACCHARIDES VARYING IN DEGREE OF SULFATION AND HEXURONIC ACID STEREOCHEMISTRY.

Franklin E Leach1, Sailaja Arungundram, Kanar Al-Mafraji, Andre Venot, Geert-Jan Boons, I Jonathan Amster.   

Abstract

Glycosaminoglycan (GAG) carbohydrates provide a challenging analytical target for structural determination due to their polydisperse nature, non-template biosynthesis, and labile n class="Chemical">sulfate modifications. The resultant structures, although heterogeneous, contain domains which indicate a sulfation pattern or code that correlates to specific function. Mass spectrometry, in particular electron detachment dissociation Fourier transform ion cyclotron resonance (EDD FT-ICR MS), provides a highly sensitive platform for GAG structural analysis by providing cross-ring cleavages for sulfation location and product ions specific to hexuronic acid stereochemistry. To investigate the effect of sulfation pattern and variations in stereochemistry on EDD spectra, a series of synthetic heparan sulfate (HS) tetrasaccharides are examined. Whereas previous studies have focused on lowly sulfated compounds (0.5-1 sulfate groups per disaccharide), the current work extends the application of EDD to more highly sulfated tetrasaccharides (1-2 sulfate groups per disaccharide) and presents the first EDD of a tetrasaccharide containing a sulfated hexuronic acid. For these more highly sulfated HS oligomers, alternative strategies are shown to be effective for extracting full structural details. These strategies inlcude sodium cation replacement of protons, for determining the sites of sulfation, and desulfation of the oligosaccharides for the generation of product ions for assigning uronic acid stereochemistry.

Entities:  

Year:  2012        PMID: 23230388      PMCID: PMC3517180          DOI: 10.1016/j.ijms.2012.07.002

Source DB:  PubMed          Journal:  Int J Mass Spectrom        ISSN: 1387-3806            Impact factor:   1.986


  43 in total

1.  Distinguishing glucuronic from iduronic acid in glycosaminoglycan tetrasaccharides by using electron detachment dissociation.

Authors:  Jeremy J Wolff; Lianli Chi; Robert J Linhardt; I Jonathan Amster
Journal:  Anal Chem       Date:  2007-01-25       Impact factor: 6.986

2.  Glycosaminoglycan characterization by electrospray ionization mass spectrometry including fourier transform mass spectrometry.

Authors:  Tatiana N Laremore; Franklin E Leach; Kemal Solakyildirim; I Jonathan Amster; Robert J Linhardt
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

3.  Compositional analysis of glycosaminoglycans by electrospray mass spectrometry.

Authors:  J Zaia; C E Costello
Journal:  Anal Chem       Date:  2001-01-15       Impact factor: 6.986

4.  The V3 region of the envelope glycoprotein of human immunodeficiency virus type 1 binds sulfated polysaccharides and CD4-derived synthetic peptides.

Authors:  D Batinić; F A Robey
Journal:  J Biol Chem       Date:  1992-04-05       Impact factor: 5.157

Review 5.  Chemical approaches to deciphering the glycosaminoglycan code.

Authors:  Cristal I Gama; Linda C Hsieh-Wilson
Journal:  Curr Opin Chem Biol       Date:  2005-10-18       Impact factor: 8.822

6.  Specificity and affinity of binding of herpes simplex virus type 2 glycoprotein B to glycosaminoglycans.

Authors:  R K Williams; S E Straus
Journal:  J Virol       Date:  1997-02       Impact factor: 5.103

7.  Structure of the antithrombin-binding site in heparin.

Authors:  U Lindahl; G Bäckström; M Höök; L Thunberg; L A Fransson; A Linker
Journal:  Proc Natl Acad Sci U S A       Date:  1979-07       Impact factor: 11.205

8.  Modular synthesis of heparan sulfate oligosaccharides for structure-activity relationship studies.

Authors:  Sailaja Arungundram; Kanar Al-Mafraji; Jinkeng Asong; Franklin E Leach; I Jonathan Amster; Andre Venot; Jeremy E Turnbull; Geert-Jan Boons
Journal:  J Am Chem Soc       Date:  2009-12-02       Impact factor: 15.419

9.  Structural analysis of bikunin glycosaminoglycan.

Authors:  Lianli Chi; Jeremy J Wolff; Tatiana N Laremore; Odile F Restaino; Jin Xie; Chiara Schiraldi; Toshihiko Toida; I Jonathan Amster; Robert J Linhardt
Journal:  J Am Chem Soc       Date:  2008-02-05       Impact factor: 15.419

10.  Electron detachment dissociation of dermatan sulfate oligosaccharides.

Authors:  Jeremy J Wolff; Tatiana N Laremore; Alexander M Busch; Robert J Linhardt; I Jonathan Amster
Journal:  J Am Soc Mass Spectrom       Date:  2007-10-22       Impact factor: 3.109

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  16 in total

1.  Sequencing Heparan Sulfate Using HILIC LC-NETD-MS/MS.

Authors:  Jiandong Wu; Juan Wei; Pradeep Chopra; Geert-Jan Boons; Cheng Lin; Joseph Zaia
Journal:  Anal Chem       Date:  2019-08-29       Impact factor: 6.986

2.  Charge Transfer Dissociation of Complex Oligosaccharides: Comparison with Collision-Induced Dissociation and Extreme Ultraviolet Dissociative Photoionization.

Authors:  David Ropartz; Pengfei Li; Mathieu Fanuel; Alexandre Giuliani; Hélène Rogniaux; Glen P Jackson
Journal:  J Am Soc Mass Spectrom       Date:  2016-08-31       Impact factor: 3.109

Review 3.  Synthetic Oligosaccharide Libraries and Microarray Technology: A Powerful Combination for the Success of Current Glycosaminoglycan Interactomics.

Authors:  Vitor H Pomin; Xu Wang
Journal:  ChemMedChem       Date:  2017-12-06       Impact factor: 3.466

4.  Structural Characterization of Sulfated Glycosaminoglycans Using Charge-Transfer Dissociation.

Authors:  Lauren E Pepi; Zachary J Sasiene; Praneeth M Mendis; Glen P Jackson; I Jonathan Amster
Journal:  J Am Soc Mass Spectrom       Date:  2020-09-03       Impact factor: 3.109

5.  De Novo Sequencing of Complex Mixtures of Heparan Sulfate Oligosaccharides.

Authors:  Rongrong Huang; Chengli Zong; Andre Venot; Yulun Chiu; Dandan Zhou; Geert-Jan Boons; Joshua S Sharp
Journal:  Anal Chem       Date:  2016-04-27       Impact factor: 6.986

6.  Negative electron transfer dissociation Fourier transform mass spectrometry of glycosaminoglycan carbohydrates.

Authors:  Franklin E Leach; Jeremy J Wolff; Zhongping Xiao; Melissa Ly; Tatiana N Laremore; Sailaja Arungundram; Kanar Al-Mafraji; Andre Venot; Geert-Jan Boons; Robert J Linhardt; I Jonathan Amster
Journal:  Eur J Mass Spectrom (Chichester)       Date:  2011       Impact factor: 1.067

7.  Negative Electron Transfer Dissociation Sequencing of Increasingly Sulfated Glycosaminoglycan Oligosaccharides on an Orbitrap Mass Spectrometer.

Authors:  Franklin E Leach; Nicholas M Riley; Michael S Westphall; Joshua J Coon; I Jonathan Amster
Journal:  J Am Soc Mass Spectrom       Date:  2017-06-06       Impact factor: 3.109

8.  Negative Electron Transfer Dissociation Sequencing of 3-O-Sulfation-Containing Heparan Sulfate Oligosaccharides.

Authors:  Jiandong Wu; Juan Wei; John D Hogan; Pradeep Chopra; Apoorva Joshi; Weigang Lu; Joshua Klein; Geert-Jan Boons; Cheng Lin; Joseph Zaia
Journal:  J Am Soc Mass Spectrom       Date:  2018-03-21       Impact factor: 3.109

9.  Single Stage Tandem Mass Spectrometry Assignment of the C-5 Uronic Acid Stereochemistry in Heparan Sulfate Tetrasaccharides using Electron Detachment Dissociation.

Authors:  Isaac Agyekum; Chengli Zong; Geert-Jan Boons; I Jonathan Amster
Journal:  J Am Soc Mass Spectrom       Date:  2017-04-07       Impact factor: 3.109

10.  Characterization and Quantification of Highly Sulfated Glycosaminoglycan Isomers by Gated-Trapped Ion Mobility Spectrometry Negative Electron Transfer Dissociation MS/MS.

Authors:  Juan Wei; Jiandong Wu; Yang Tang; Mark E Ridgeway; Melvin A Park; Catherine E Costello; Joseph Zaia; Cheng Lin
Journal:  Anal Chem       Date:  2019-01-31       Impact factor: 6.986

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