Literature DB >> 23230346

A Benchmark Test Suite for Proton Transfer Energies and its Use to Test Electronic Structure Model Chemistries.

Santhanamoorthi Nachimuthu1, Jiali Gao, Donald G Truhlar.   

Abstract

We present benchmark calculations of nine selected points on potential energy surfaces describing proton transfer process in three model systems, H(5)O(2) (+), CH(3)OH…H(+)…OH(2), and CH(3)COOHOH(2). The calculated relative energies of these geometries are compared to those calculated by various wave function and density functional methods, including the polarized molecular orbital (PMO) model recently developed in our research group and other semiempirical molecular orbital methods. We found that the SCC-DFTB and PMO methods (the latter available so far only for molecules consisting of only O and H and therefore only for the first of the three model systems) give results that are, on average, within 2 kcal/mol of the benchmark results. Other semiempirical molecular orbital methods have mean unsigned errors (MUEs) of 3 to 8 kcal/mol, local density functionals have MUEs in the range 0.7 to 3.7 kcal/mol, and hybrid density functionals have MUEs of only 0.3 to 1.0 kcal/mol, with the best density functional performance obtained by hybrid meta-GGAs, especially M06 and PW6B95.

Entities:  

Year:  2012        PMID: 23230346      PMCID: PMC3516617          DOI: 10.1016/j.chemphys.2012.01.014

Source DB:  PubMed          Journal:  Chem Phys        ISSN: 0301-0104            Impact factor:   2.348


  36 in total

1.  Generalized Gradient Approximation Made Simple.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-10-28       Impact factor: 9.161

2.  Design of Density Functionals by Combining the Method of Constraint Satisfaction with Parametrization for Thermochemistry, Thermochemical Kinetics, and Noncovalent Interactions.

Authors:  Yan Zhao; Nathan E Schultz; Donald G Truhlar
Journal:  J Chem Theory Comput       Date:  2006-03       Impact factor: 6.006

3.  Sequential proton transfer through water bridges in acid-base reactions.

Authors:  Omar F Mohammed; Dina Pines; Jens Dreyer; Ehud Pines; Erik T J Nibbering
Journal:  Science       Date:  2005-10-07       Impact factor: 47.728

4.  Design of density functionals that are broadly accurate for thermochemistry, thermochemical kinetics, and nonbonded interactions.

Authors:  Yan Zhao; Donald G Truhlar
Journal:  J Phys Chem A       Date:  2005-06-30       Impact factor: 2.781

5.  Infrared predissociation spectroscopy of ammonia cluster cations (NH3)n+ (n=2-4) produced by vacuum-ultraviolet photoionization.

Authors:  Yoshiyuki Matsuda; Mayumi Mori; Masaki Hachiya; Asuka Fujii; Naohiko Mikami
Journal:  J Chem Phys       Date:  2006-10-28       Impact factor: 3.488

6.  Polarized Molecular Orbital Model Chemistry. II. The PMO Method.

Authors:  Peng Zhang; Luke Fiedler; Hannah R Leverentz; Donald G Truhlar; Jiali Gao
Journal:  J Chem Theory Comput       Date:  2011-04-12       Impact factor: 6.006

7.  A proton between two waters: insight from full-dimensional quantum-dynamics simulations of the [H2O-H-OH2]+ cluster.

Authors:  Oriol Vendrell; Hans-Dieter Meyer
Journal:  Phys Chem Chem Phys       Date:  2008-07-04       Impact factor: 3.676

8.  Theoretical analysis of kinetic isotope effects on proton transfer reactions between substituted alpha-methoxystyrenes and substituted acetic acids.

Authors:  Kin-Yiu Wong; John P Richard; Jiali Gao
Journal:  J Am Chem Soc       Date:  2009-10-07       Impact factor: 15.419

9.  Extension of the PDDG/PM3 Semiempirical Molecular Orbital Method to Sulfur, Silicon, and Phosphorus.

Authors:  Ivan Tubert-Brohman; Cristiano Ruch Werneck Guimarães; William L Jorgensen
Journal:  J Chem Theory Comput       Date:  2005       Impact factor: 6.006

10.  Modulation of excited-state intramolecular proton transfer reaction of 1-hydroxy-2-naphthaldehyde in different supramolecular assemblies.

Authors:  Bijan Kumar Paul; Anuva Samanta; Nikhil Guchhait
Journal:  Langmuir       Date:  2010-03-02       Impact factor: 3.882

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  3 in total

1.  Quantum mechanical force field for water with explicit electronic polarization.

Authors:  Jaebeom Han; Michael J M Mazack; Peng Zhang; Donald G Truhlar; Jiali Gao
Journal:  J Chem Phys       Date:  2013-08-07       Impact factor: 3.488

2.  Optimization of parameters for semiempirical methods VI: more modifications to the NDDO approximations and re-optimization of parameters.

Authors:  James J P Stewart
Journal:  J Mol Model       Date:  2012-11-28       Impact factor: 1.810

Review 3.  Molecular Theory of Detonation Initiation: Insight from First Principles Modeling of the Decomposition Mechanisms of Organic Nitro Energetic Materials.

Authors:  Roman V Tsyshevsky; Onise Sharia; Maija M Kuklja
Journal:  Molecules       Date:  2016-02-19       Impact factor: 4.411

  3 in total

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