Literature DB >> 23230159

The CARMEN software as a service infrastructure.

Michael Weeks1, Mark Jessop, Martyn Fletcher, Victoria Hodge, Tom Jackson, Jim Austin.   

Abstract

The CARMEN platform allows neuroscientists to share data, metadata, services and workflows, and to execute these services and workflows remotely via a Web portal. This paper describes how we implemented a service-based infrastructure into the CARMEN Virtual Laboratory. A Software as a Service framework was developed to allow generic new and legacy code to be deployed as services on a heterogeneous execution framework. Users can submit analysis code typically written in Matlab, Python, C/C++ and R as non-interactive standalone command-line applications and wrap them as services in a form suitable for deployment on the platform. The CARMEN Service Builder tool enables neuroscientists to quickly wrap their analysis software for deployment to the CARMEN platform, as a service without knowledge of the service framework or the CARMEN system. A metadata schema describes each service in terms of both system and user requirements. The search functionality allows services to be quickly discovered from the many services available. Within the platform, services may be combined into more complicated analyses using the workflow tool. CARMEN and the service infrastructure are targeted towards the neuroscience community; however, it is a generic platform, and can be targeted towards any discipline.

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Year:  2012        PMID: 23230159     DOI: 10.1098/rsta.2012.0080

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  5 in total

1.  A Digital Repository and Execution Platform for Interactive Scholarly Publications in Neuroscience.

Authors:  Victoria Hodge; Mark Jessop; Martyn Fletcher; Michael Weeks; Aaron Turner; Tom Jackson; Colin Ingram; Leslie Smith; Jim Austin
Journal:  Neuroinformatics       Date:  2016-01

2.  e-Science-towards the cloud: infrastructures, applications and research.

Authors:  Paul Townend; Jie Xu; Jim Austin
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2012-12-10       Impact factor: 4.226

3.  A scalable neuroinformatics data flow for electrophysiological signals using MapReduce.

Authors:  Catherine Jayapandian; Annan Wei; Priya Ramesh; Bilal Zonjy; Samden D Lhatoo; Kenneth Loparo; Guo-Qiang Zhang; Satya S Sahoo
Journal:  Front Neuroinform       Date:  2015-03-16       Impact factor: 4.081

4.  A data repository and analysis framework for spontaneous neural activity recordings in developing retina.

Authors:  Stephen John Eglen; Michael Weeks; Mark Jessop; Jennifer Simonotto; Tom Jackson; Evelyne Sernagor
Journal:  Gigascience       Date:  2014-03-26       Impact factor: 6.524

Review 5.  Processing and Analysis of Multichannel Extracellular Neuronal Signals: State-of-the-Art and Challenges.

Authors:  Mufti Mahmud; Stefano Vassanelli
Journal:  Front Neurosci       Date:  2016-06-02       Impact factor: 4.677

  5 in total

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