Literature DB >> 23223968

Lysine biosynthesis in bacteria: a metallodesuccinylase as a potential antimicrobial target.

Danuta M Gillner1, Daniel P Becker, Richard C Holz.   

Abstract

In this review, we summarize the recent literature on dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE) enzymes, with an emphasis on structure-function studies that provide insight into the catalytic mechanism. Crystallographic data have also provided insight into residues that might be involved in substrate and hence inhibitor recognition and binding. These data have led to the design and synthesis of several new DapE inhibitors, which are described along with what is known about how inhibitors interact with the active site of DapE enzymes, including the efficacy of a moderately strong DapE inhibitor.

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Year:  2012        PMID: 23223968      PMCID: PMC3862034          DOI: 10.1007/s00775-012-0965-1

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  47 in total

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Journal:  Proteins       Date:  2005-09-01

2.  The challenge of antibiotic resistance.

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Journal:  Sci Am       Date:  1998-03       Impact factor: 2.142

Review 3.  Aminopeptidases: towards a mechanism of action.

Authors:  A Taylor
Journal:  Trends Biochem Sci       Date:  1993-05       Impact factor: 13.807

4.  Processing of the initiation methionine from proteins: properties of the Escherichia coli methionine aminopeptidase and its gene structure.

Authors:  A Ben-Bassat; K Bauer; S Y Chang; K Myambo; A Boosman; S Chang
Journal:  J Bacteriol       Date:  1987-02       Impact factor: 3.490

5.  Structural basis of catalysis by monometalated methionine aminopeptidase.

Authors:  Qi-Zhuang Ye; Sheng-Xue Xie; Ze-Qiang Ma; Min Huang; Robert P Hanzlik
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-12       Impact factor: 11.205

6.  Eukaryotic methionyl aminopeptidases: two classes of cobalt-dependent enzymes.

Authors:  S M Arfin; R L Kendall; L Hall; L H Weaver; A E Stewart; B W Matthews; R A Bradshaw
Journal:  Proc Natl Acad Sci U S A       Date:  1995-08-15       Impact factor: 11.205

7.  Global tuberculosis incidence and mortality during 1990-2000.

Authors:  P J Dolin; M C Raviglione; A Kochi
Journal:  Bull World Health Organ       Date:  1994       Impact factor: 9.408

8.  Crystal structure of Aeromonas proteolytica aminopeptidase: a prototypical member of the co-catalytic zinc enzyme family.

Authors:  B Chevrier; C Schalk; H D'Orchymont; J M Rondeau; D Moras; C Tarnus
Journal:  Structure       Date:  1994-04-15       Impact factor: 5.006

9.  Substrate specificity, metal binding properties, and spectroscopic characterization of the DapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase from Haemophilus influenzae.

Authors:  David L Bienvenue; Danuta M Gilner; Ryan S Davis; Brian Bennett; Richard C Holz
Journal:  Biochemistry       Date:  2003-09-16       Impact factor: 3.162

10.  A class of selective antibacterials derived from a protein kinase inhibitor pharmacophore.

Authors:  J Richard Miller; Steve Dunham; Igor Mochalkin; Craig Banotai; Matthew Bowman; Susan Buist; Bill Dunkle; Debra Hanna; H James Harwood; Michael D Huband; Alla Karnovsky; Michael Kuhn; Chris Limberakis; Jia Y Liu; Shawn Mehrens; W Thomas Mueller; Lakshmi Narasimhan; Adam Ogden; Jeff Ohren; J V N Vara Prasad; John A Shelly; Laura Skerlos; Mark Sulavik; V Hayden Thomas; Steve VanderRoest; LiAnn Wang; Zhigang Wang; Amy Whitton; Tong Zhu; C Kendall Stover
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-22       Impact factor: 11.205

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  17 in total

1.  Structural Evidence of a Major Conformational Change Triggered by Substrate Binding in DapE Enzymes: Impact on the Catalytic Mechanism.

Authors:  Boguslaw Nocek; Cory Reidl; Anna Starus; Tahirah Heath; David Bienvenue; Jerzy Osipiuk; Robert Jedrzejczak; Andrzej Joachimiak; Daniel P Becker; Richard C Holz
Journal:  Biochemistry       Date:  2018-01-12       Impact factor: 3.162

2.  Inhibition of the dapE-Encoded N-Succinyl-L,L-diaminopimelic Acid Desuccinylase from Neisseria meningitidis by L-Captopril.

Authors:  Anna Starus; Boguslaw Nocek; Brian Bennett; James A Larrabee; Daniel L Shaw; Wisath Sae-Lee; Marie T Russo; Danuta M Gillner; Magdalena Makowska-Grzyska; Andrzej Joachimiak; Richard C Holz
Journal:  Biochemistry       Date:  2015-08-03       Impact factor: 3.162

3.  Multi-metal Restriction by Calprotectin Impacts De Novo Flavin Biosynthesis in Acinetobacter baumannii.

Authors:  Jiefei Wang; Zachery R Lonergan; Giovanni Gonzalez-Gutierrez; Brittany L Nairn; Christina N Maxwell; Yixiang Zhang; Claudia Andreini; Jonathan A Karty; Walter J Chazin; Jonathan C Trinidad; Eric P Skaar; David P Giedroc
Journal:  Cell Chem Biol       Date:  2019-03-21       Impact factor: 8.116

4.  Plasma metabolomics for the diagnosis and prognosis of H1N1 influenza pneumonia.

Authors:  Mohammad M Banoei; Hans J Vogel; Aalim M Weljie; Anand Kumar; Sachin Yende; Derek C Angus; Brent W Winston
Journal:  Crit Care       Date:  2017-04-19       Impact factor: 9.097

5.  Genome Subtraction and Comparison for the Identification of Novel Drug Targets against Mycobacterium avium subsp. hominissuis.

Authors:  Reaz Uddin; Bushra Siraj; Muhammad Rashid; Ajmal Khan; Sobia Ahsan Halim; Ahmed Al-Harrasi
Journal:  Pathogens       Date:  2020-05-12

6.  Comparative structural and mechanistic studies of 4-hydroxy-tetrahydrodipicolinate reductases from Mycobacterium tuberculosis and Vibrio vulnificus.

Authors:  Swanandi Pote; Sangita Kachhap; Nicholas J Mank; Leily Daneshian; Vincent Klapper; Sarah Pye; Amy K Arnette; Linda S Shimizu; Tomasz Borowski; Maksymilian Chruszcz
Journal:  Biochim Biophys Acta Gen Subj       Date:  2020-09-24       Impact factor: 3.770

7.  The dimerization domain in DapE enzymes is required for catalysis.

Authors:  Boguslaw Nocek; Anna Starus; Magdalena Makowska-Grzyska; Blanca Gutierrez; Stephen Sanchez; Robert Jedrzejczak; Jamey C Mack; Kenneth W Olsen; Andrzej Joachimiak; Richard C Holz
Journal:  PLoS One       Date:  2014-05-07       Impact factor: 3.240

8.  Reconstruction of diaminopimelic acid biosynthesis allows characterisation of Mycobacterium tuberculosis N-succinyl-L,L-diaminopimelic acid desuccinylase.

Authors:  Veeraraghavan Usha; Adrian J Lloyd; David I Roper; Christopher G Dowson; Guennadi Kozlov; Kalle Gehring; Smita Chauhan; Hasan T Imam; Claudia A Blindauer; Gurdyal S Besra
Journal:  Sci Rep       Date:  2016-03-15       Impact factor: 4.379

9.  Practical spectrophotometric assay for the dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase, a potential antibiotic target.

Authors:  Tahirah K Heath; Marlon R Lutz; Cory T Reidl; Estefany R Guzman; Claire A Herbert; Boguslaw P Nocek; Richard C Holz; Kenneth W Olsen; Miguel A Ballicora; Daniel P Becker
Journal:  PLoS One       Date:  2018-04-26       Impact factor: 3.240

10.  Involvement of a dihydrodipicolinate synthase gene (FaDHDPS1) in fungal development, pathogenesis and stress responses in Fusarium asiaticum.

Authors:  Weichao Ren; Jiting Tao; Dongya Shi; Wenchan Chen; Changjun Chen
Journal:  BMC Microbiol       Date:  2018-10-05       Impact factor: 3.605

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