Literature DB >> 23223168

Six steps closer to FRET-driven structural biology.

Timothy D Craggs, Achillefs N Kapanidis.   

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Year:  2012        PMID： 23223168     DOI： 10.1038/nmeth.2257

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  12 in total

1.  Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex.

Authors:  Vladimir Mekler; Ekaterine Kortkhonjia; Jayanta Mukhopadhyay; Jennifer Knight; Andrei Revyakin; Achillefs N Kapanidis; Wei Niu; Yon W Ebright; Ronald Levy; Richard H Ebright
Journal:  Cell       Date:  2002-03-08       Impact factor: 41.582

Review 2.  Adding new chemistries to the genetic code.

Authors:  Chang C Liu; Peter G Schultz
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

3.  Accurate single-molecule FRET studies using multiparameter fluorescence detection.

Authors:  Evangelos Sisamakis; Alessandro Valeri; Stanislav Kalinin; Paul J Rothwell; Claus A M Seidel
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

4.  Application of the nano-positioning system to the analysis of fluorescence resonance energy transfer networks.

Authors:  Adam Muschielok; Jens Michaelis
Journal:  J Phys Chem B       Date:  2011-09-23       Impact factor: 2.991

5.  A toolkit and benchmark study for FRET-restrained high-precision structural modeling.

Authors:  Stanislav Kalinin; Thomas Peulen; Simon Sindbert; Paul J Rothwell; Sylvia Berger; Tobias Restle; Roger S Goody; Holger Gohlke; Claus A M Seidel
Journal:  Nat Methods       Date:  2012-11-11       Impact factor: 28.547

6.  Energy transfer: a spectroscopic ruler.

Authors:  L Stryer; R P Haugland
Journal:  Proc Natl Acad Sci U S A       Date:  1967-08       Impact factor: 11.205

7.  Domain orientation in the N-Terminal PDZ tandem from PSD-95 is maintained in the full-length protein.

Authors:  James J McCann; Liqiang Zheng; Salvatore Chiantia; Mark E Bowen
Journal:  Structure       Date:  2011-06-08       Impact factor: 5.006

Review 8.  Three-dimensional molecular modeling with single molecule FRET.

Authors:  Axel T Brunger; Pavel Strop; Marija Vrljic; Steven Chu; Keith R Weninger
Journal:  J Struct Biol       Date:  2010-09-17       Impact factor: 2.867

9.  Detecting the conformation of individual proteins in live cells.

Authors:  John J Sakon; Keith R Weninger
Journal:  Nat Methods       Date:  2010-01-31       Impact factor: 28.547

10.  A nano-positioning system for macromolecular structural analysis.

Authors:  Adam Muschielok; Joanna Andrecka; Anass Jawhari; Florian Brückner; Patrick Cramer; Jens Michaelis
Journal:  Nat Methods       Date:  2008-10-12       Impact factor: 28.547
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  10 in total

Review 1.  Studying DNA-protein interactions with single-molecule Förster resonance energy transfer.

Authors:  Shazia Farooq; Carel Fijen; Johannes Hohlbein
Journal:  Protoplasma       Date:  2013-12-28       Impact factor: 3.356

2.  Cholesterol modulates the cellular localization of Orai1 channels and its disposition among membrane domains.

Authors:  A Bohórquez-Hernández; Enrico Gratton; Jonathan Pacheco; Alexander Asanov; Luis Vaca
Journal:  Biochim Biophys Acta Mol Cell Biol Lipids       Date:  2017-09-13       Impact factor: 4.698

3.  Single-molecule FRET reveals a corkscrew RNA structure for the polymerase-bound influenza virus promoter.

Authors:  Alexandra I Tomescu; Nicole C Robb; Narin Hengrung; Ervin Fodor; Achillefs N Kapanidis
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-28       Impact factor: 11.205

Review 4.  Toward dynamic structural biology: Two decades of single-molecule Förster resonance energy transfer.

Authors:  Eitan Lerner; Thorben Cordes; Antonino Ingargiola; Yazan Alhadid; SangYoon Chung; Xavier Michalet; Shimon Weiss
Journal:  Science       Date:  2018-01-19       Impact factor: 47.728

Review 5.  FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices.

Authors:  Eitan Lerner; Anders Barth; Jelle Hendrix; Benjamin Ambrose; Victoria Birkedal; Scott C Blanchard; Richard Börner; Hoi Sung Chung; Thorben Cordes; Timothy D Craggs; Ashok A Deniz; Jiajie Diao; Jingyi Fei; Ruben L Gonzalez; Irina V Gopich; Taekjip Ha; Christian A Hanke; Gilad Haran; Nikos S Hatzakis; Sungchul Hohng; Seok-Cheol Hong; Thorsten Hugel; Antonino Ingargiola; Chirlmin Joo; Achillefs N Kapanidis; Harold D Kim; Ted Laurence; Nam Ki Lee; Tae-Hee Lee; Edward A Lemke; Emmanuel Margeat; Jens Michaelis; Xavier Michalet; Sua Myong; Daniel Nettels; Thomas-Otavio Peulen; Evelyn Ploetz; Yair Razvag; Nicole C Robb; Benjamin Schuler; Hamid Soleimaninejad; Chun Tang; Reza Vafabakhsh; Don C Lamb; Claus Am Seidel; Shimon Weiss
Journal:  Elife       Date:  2021-03-29       Impact factor: 8.140

6.  A Sensitized Emission Based Calibration of FRET Efficiency for Probing the Architecture of Macromolecular Machines.

Authors:  Ajit Joglekar; Renjie Chen; Joshua Lawrimore
Journal:  Cell Mol Bioeng       Date:  2013-07-11       Impact factor: 2.321

7.  Caging and Photoactivation in Single-Molecule Förster Resonance Energy Transfer Experiments.

Authors:  Atieh Aminian Jazi; Evelyn Ploetz; Muhamad Arizki; Balasubramaniam Dhandayuthapani; Izabela Waclawska; Reinhard Krämer; Christine Ziegler; Thorben Cordes
Journal:  Biochemistry       Date:  2017-03-31       Impact factor: 3.162

8.  DeepFRET, a software for rapid and automated single-molecule FRET data classification using deep learning.

Authors:  Johannes Thomsen; Magnus Berg Sletfjerding; Simon Bo Jensen; Stefano Stella; Bijoya Paul; Mette Galsgaard Malle; Guillermo Montoya; Troels Christian Petersen; Nikos S Hatzakis
Journal:  Elife       Date:  2020-11-03       Impact factor: 8.140

Review 9.  Integrating single-molecule FRET and biomolecular simulations to study diverse interactions between nucleic acids and proteins.

Authors:  Joshua C Sanders; Erik D Holmstrom
Journal:  Essays Biochem       Date:  2021-04-16       Impact factor: 8.000

10.  Integrating single-molecule spectroscopy and simulations for the study of intrinsically disordered proteins.

Authors:  Jhullian J Alston; Andrea Soranno; Alex S Holehouse
Journal:  Methods       Date:  2021-04-06       Impact factor: 3.608
  10 in total

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