Literature DB >> 23221775

Unraveling the circadian clock in Arabidopsis.

Xiaoxue Wang1, Ligeng Ma2.   

Abstract

The circadian clock is an endogenous timing system responsible for coordinating an organism's biological processes with its environment. Interlocked transcriptional feedback loops constitute the fundamental architecture of the circadian clock. In Arabidopsis, three feedback loops, the core loop, morning loop and evening loop, comprise a network that is the basis of the circadian clock. The components of these three loops are regulated in distinct ways, including transcriptional, post-transcriptional and posttranslational mechanisms. The discovery of the DNA-binding and repressive activities of TOC1 has overturned our initial concept of its function in the circadian clock. The alternative splicing of circadian clock-related genes plays an essential role in normal functioning of the clock and enables organisms to sense environmental changes. In this review, we describe the regulatory mechanisms of the circadian clock that have been identified in Arabidopsis.

Entities:  

Keywords:  Arabidopsis; circadian clock; post-transcriptional regulation

Mesh:

Substances:

Year:  2012        PMID: 23221775      PMCID: PMC3657000          DOI: 10.4161/psb.23014

Source DB:  PubMed          Journal:  Plant Signal Behav        ISSN: 1559-2316


  104 in total

1.  The flowering time regulator CONSTANS is recruited to the FLOWERING LOCUS T promoter via a unique cis-element.

Authors:  Shiv B Tiwari; Yu Shen; Han-Chang Chang; Yanli Hou; Amanda Harris; Siu Fong Ma; Megan McPartland; Graham J Hymus; Luc Adam; Colleen Marion; Alemu Belachew; Peter P Repetti; T Lynne Reuber; Oliver J Ratcliffe
Journal:  New Phytol       Date:  2010-04-12       Impact factor: 10.151

Review 2.  Posttranscriptional and posttranslational regulation of clock genes.

Authors:  Emily Harms; Saul Kivimäe; Michael W Young; Lino Saez
Journal:  J Biol Rhythms       Date:  2004-10       Impact factor: 3.182

3.  Composition and three-dimensional EM structure of double affinity-purified, human prespliceosomal A complexes.

Authors:  Nastaran Behzadnia; Monika M Golas; Klaus Hartmuth; Bjoern Sander; Berthold Kastner; Jochen Deckert; Prakash Dube; Cindy L Will; Henning Urlaub; Holger Stark; Reinhard Lührmann
Journal:  EMBO J       Date:  2007-03-01       Impact factor: 11.598

4.  Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: regulation by hormones and stresses.

Authors:  Saiprasad Goud Palusa; Gul Shad Ali; Anireddy S N Reddy
Journal:  Plant J       Date:  2007-02-22       Impact factor: 6.417

5.  Critical role for CCA1 and LHY in maintaining circadian rhythmicity in Arabidopsis.

Authors:  David Alabadí; Marcelo J Yanovsky; Paloma Más; Stacey L Harmer; Steve A Kay
Journal:  Curr Biol       Date:  2002-04-30       Impact factor: 10.834

6.  CONSTANS and the CCAAT box binding complex share a functionally important domain and interact to regulate flowering of Arabidopsis.

Authors:  Stephan Wenkel; Franziska Turck; Kamy Singer; Lionel Gissot; José Le Gourrierec; Alon Samach; George Coupland
Journal:  Plant Cell       Date:  2006-11-30       Impact factor: 11.277

7.  Arginine methylation mediated by the Arabidopsis homolog of PRMT5 is essential for proper pre-mRNA splicing.

Authors:  Xian Deng; Lianfeng Gu; Chunyan Liu; Tiancong Lu; Falong Lu; Zhike Lu; Peng Cui; Yanxi Pei; Baichen Wang; Songnian Hu; Xiaofeng Cao
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-18       Impact factor: 11.205

8.  The Arabidopsis pseudo-response regulators, PRR5 and PRR7, coordinately play essential roles for circadian clock function.

Authors:  Norihito Nakamichi; Masanori Kita; Shogo Ito; Eriko Sato; Takafumi Yamashino; Takeshi Mizuno
Journal:  Plant Cell Physiol       Date:  2005-02-02       Impact factor: 4.927

9.  Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: rapid decay is associated with a group of touch- and specific clock-controlled genes.

Authors:  Rodrigo A Gutierrez; Rob M Ewing; J Michael Cherry; Pamela J Green
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-07       Impact factor: 11.205

10.  A functional link between rhythmic changes in chromatin structure and the Arabidopsis biological clock.

Authors:  Mariano Perales; Paloma Más
Journal:  Plant Cell       Date:  2007-07-06       Impact factor: 11.277

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  4 in total

1.  From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.

Authors:  Lisa Van den Broeck; Marieke Dubois; Mattias Vermeersch; Veronique Storme; Minami Matsui; Dirk Inzé
Journal:  Mol Syst Biol       Date:  2017-12-21       Impact factor: 11.429

Review 2.  Role of Circadian Rhythms in Major Plant Metabolic and Signaling Pathways.

Authors:  Ajila Venkat; Sowbiya Muneer
Journal:  Front Plant Sci       Date:  2022-04-06       Impact factor: 6.627

Review 3.  The influence of light quality, circadian rhythm, and photoperiod on the CBF-mediated freezing tolerance.

Authors:  Punyakishore Maibam; Ganesh M Nawkar; Joung Hun Park; Vaidurya Pratap Sahi; Sang Yeol Lee; Chang Ho Kang
Journal:  Int J Mol Sci       Date:  2013-05-30       Impact factor: 5.923

4.  SKIP controls flowering time via the alternative splicing of SEF pre-mRNA in Arabidopsis.

Authors:  Zhibo Cui; Aizi Tong; Yiqiong Huo; Zhiqiang Yan; Weiqi Yang; Xianli Yang; Xiao-Xue Wang
Journal:  BMC Biol       Date:  2017-09-11       Impact factor: 7.431

  4 in total

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