Literature DB >> 23221496

Plastome sequences of two New World bamboos--Arundinaria gigantea and Cryptochloa strictiflora (Poaceae)--extend phylogenomic understanding of Bambusoideae.

Sean V Burke1, Colin P Grennan, Melvin R Duvall.   

Abstract

PREMISE OF THE STUDY: Two New World species of Bambusoideae, Arundinaria gigantea and Crytpochloa strictiflora, were investigated in a phylogenomic context. Complete plastome sequences have been previously determined and analyzed for nine bambusoid species that exclusively represent Old World lineages. The addition of New World species provides more complete information on relationships within Bambusoideae. •
METHODS: Plastomes from A. gigantea and C. strictiflora were sequenced using Sanger methods. Phylogenomic and divergence estimate analyses were conducted on both species with 23 other Poaceae. • KEY
RESULTS: Phylogenomic and divergence analyses suggested that A. gigantea diverged from within Arundinarieae between 1.94-3.92 mya and that C. strictiflora diverged as the sister to tropical woody species between 24.83 and 40.22 mya. These results are correlated with modern relative diversities in the two lineages. •
CONCLUSIONS: The two New World bamboos show unique plastome features accumulated and maintained in biogeographic isolation from Old World taxa. The overall evidence for A. gigantea is consistent with recent dispersal, and that for C. strictiflora is consistent with vicariance.

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Year:  2012        PMID: 23221496     DOI: 10.3732/ajb.1200365

Source DB:  PubMed          Journal:  Am J Bot        ISSN: 0002-9122            Impact factor:   3.844


  27 in total

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Authors:  Lauren M Orton; Sean V Burke; William P Wysocki; Melvin R Duvall
Journal:  Curr Genet       Date:  2016-08-03       Impact factor: 3.886

2.  A 250 plastome phylogeny of the grass family (Poaceae): topological support under different data partitions.

Authors:  Jeffery M Saarela; Sean V Burke; William P Wysocki; Matthew D Barrett; Lynn G Clark; Joseph M Craine; Paul M Peterson; Robert J Soreng; Maria S Vorontsova; Melvin R Duvall
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3.  Phylogenetic inference and SSR characterization of tropical woody bamboos tribe Bambuseae (Poaceae: Bambusoideae) based on complete plastid genome sequences.

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Journal:  Curr Genet       Date:  2015-12-07       Impact factor: 3.886

4.  Plastid phylogenomics of the cool-season grass subfamily: clarification of relationships among early-diverging tribes.

Authors:  Jeffery M Saarela; William P Wysocki; Craig F Barrett; Robert J Soreng; Jerrold I Davis; Lynn G Clark; Scot A Kelchner; J Chris Pires; Patrick P Edger; Dustin R Mayfield; Melvin R Duvall
Journal:  AoB Plants       Date:  2015-05-04       Impact factor: 3.276

5.  Resolving deep relationships of PACMAD grasses: a phylogenomic approach.

Authors:  Joseph L Cotton; William P Wysocki; Lynn G Clark; Scot A Kelchner; J Chris Pires; Patrick P Edger; Dustin Mayfield-Jones; Melvin R Duvall
Journal:  BMC Plant Biol       Date:  2015-07-11       Impact factor: 4.215

6.  Evolution of the bamboos (Bambusoideae; Poaceae): a full plastome phylogenomic analysis.

Authors:  William P Wysocki; Lynn G Clark; Lakshmi Attigala; Eduardo Ruiz-Sanchez; Melvin R Duvall
Journal:  BMC Evol Biol       Date:  2015-03-18       Impact factor: 3.260

7.  Parallel ddRAD and Genome Skimming Analyses Reveal a Radiative and Reticulate Evolutionary History of the Temperate Bamboos.

Authors:  Cen Guo; Peng-Fei Ma; Guo-Qian Yang; Xia-Ying Ye; Ying Guo; Jing-Xia Liu; Yun-Long Liu; Deren A R Eaton; Zhen-Hua Guo; De-Zhu Li
Journal:  Syst Biol       Date:  2021-06-16       Impact factor: 15.683

8.  Plastome Sequence Determination and Comparative Analysis for Members of the Lolium-Festuca Grass Species Complex.

Authors:  Melanie L Hand; German C Spangenberg; John W Forster; Noel O I Cogan
Journal:  G3 (Bethesda)       Date:  2013-04-09       Impact factor: 3.154

9.  Phylogenomic analyses of nuclear genes reveal the evolutionary relationships within the BEP clade and the evidence of positive selection in Poaceae.

Authors:  Lei Zhao; Ning Zhang; Peng-Fei Ma; Qi Liu; De-Zhu Li; Zhen-Hua Guo
Journal:  PLoS One       Date:  2013-05-29       Impact factor: 3.240

10.  The Complete Chloroplast Genome of Guadua angustifolia and Comparative Analyses of Neotropical-Paleotropical Bamboos.

Authors:  Miaoli Wu; Siren Lan; Bangping Cai; Shipin Chen; Hui Chen; Shiliang Zhou
Journal:  PLoS One       Date:  2015-12-02       Impact factor: 3.240

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