Literature DB >> 23221093

"Pull moves" for rectangular lattice polymer models are not fully reversible.

Dániel Györffy1, Péter Závodszky, András Szilágyi.   

Abstract

"Pull moves" is a popular move set for lattice polymer model simulations. We show that the proof given for its reversibility earlier is flawed, and some moves are irreversible, which leads to biases in the parameters estimated from the simulations. We show how to make the move set fully reversible.

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Year:  2012        PMID: 23221093     DOI: 10.1109/TCBB.2012.129

Source DB:  PubMed          Journal:  IEEE/ACM Trans Comput Biol Bioinform        ISSN: 1545-5963            Impact factor:   3.710


  3 in total

1.  Effect of Protein Structure on Evolution of Cotranslational Folding.

Authors:  Victor Zhao; William M Jacobs; Eugene I Shakhnovich
Journal:  Biophys J       Date:  2020-08-12       Impact factor: 4.033

2.  Efficient conformational space exploration in ab initio protein folding simulation.

Authors:  Ahammed Ullah; Nasif Ahmed; Subrata Dey Pappu; Swakkhar Shatabda; A Z M Dayem Ullah; M Sohel Rahman
Journal:  R Soc Open Sci       Date:  2015-08-26       Impact factor: 2.963

3.  A firefly-inspired method for protein structure prediction in lattice models.

Authors:  Brian Maher; Andreas A Albrecht; Martin Loomes; Xin-She Yang; Kathleen Steinhöfel
Journal:  Biomolecules       Date:  2014-01-07
  3 in total

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