| Literature DB >> 23220717 |
Spiros C Denaxas1, Julie George, Emily Herrett, Anoop D Shah, Dipak Kalra, Aroon D Hingorani, Mika Kivimaki, Adam D Timmis, Liam Smeeth, Harry Hemingway.
Abstract
The goal of cardiovascular disease (CVD) research using linked bespoke studies and electronic health records (CALIBER) is to provide evidence to inform health care and public health policy for CVDs across different stages of translation, from discovery, through evaluation in trials to implementation, where linkages to electronic health records provide new scientific opportunities. The initial approach of the CALIBER programme is characterized as follows: (i) Linkages of multiple electronic heath record sources: examples include linkages between the longitudinal primary care data from the Clinical Practice Research Datalink, the national registry of acute coronary syndromes (Myocardial Ischaemia National Audit Project), hospitalization and procedure data from Hospital Episode Statistics and cause-specific mortality and social deprivation data from the Office of National Statistics. Current cohort analyses involve a million people in initially healthy populations and disease registries with ∼10(5) patients. (ii) Linkages of bespoke investigator-led cohort studies (e.g. UK Biobank) to registry data (e.g. Myocardial Ischaemia National Audit Project), providing new means of ascertaining, validating and phenotyping disease. (iii) A common data model in which routine electronic health record data are made research ready, and sharable, by defining and curating with meta-data >300 variables (categorical, continuous, event) on risk factors, CVDs and non-cardiovascular comorbidities. (iv) Transparency: all CALIBER studies have an analytic protocol registered in the public domain, and data are available (safe haven model) for use subject to approvals. For more information, e-mail s.denaxas@ucl.ac.uk.Entities:
Mesh:
Year: 2012 PMID: 23220717 PMCID: PMC3535749 DOI: 10.1093/ije/dys188
Source DB: PubMed Journal: Int J Epidemiol ISSN: 0300-5771 Impact factor: 7.196
Availability of primary care data for research in different countries
| Country | National or regional | Primary and ambulatory care data available for research linkages |
|---|---|---|
| UK | National | CPRD, access through Academic Health Sciences Networks. See |
| Sweden | National | Primary care is organized regionally; national initiatives in SwedeHeart |
| Denmark | National | Register of Medicinal Product Statistics |
| Canada | Regional | Ontario, Institute for Clinical Evaluative Sciences |
| Ontario Health Insurance Plan Physician claims database | ||
| USA | National | Medicare (for people aged ≥65 years) |
| National | Million Veteran Programme | |
| Regional | Mayo Clinic | |
| Rochester Epidemiology Project, Olmsted County | ||
| Regional | Kaiser Permanente California Research Program on Genes, Environment, and Health | |
| Regional | Intermountain Healthcare | |
| South Korea | National | National health insurance claims database from the Health Insurance Review & Assessment Service |
Linked electronic health record sources in CALIBER: types of data, coding system used and data recording details
| Sources | Types of data | Coding system | When and by whom data is coded? |
|---|---|---|---|
| Primary care: CPRD and other sources | Longitudinal primary care data Diagnoses and symptoms irrespective of hospitalization, drug prescriptions, vaccinations, blood test results, risk factors | Data recorded using the Read clinical terminology system, version 3 contains ∼99 000 codes | Data recoded by the general practitioner in real time during the consultation Hospital discharge letters coded by a practice administrator |
| Social deprivation: ONS | Small area patient social deprivation data | Index of Multiple Deprivation (2007) and Townsend score | Derived from multiple national administrative data sets |
| Disease registry: MINAP | National registry of Acute Coronary Syndrome admissions Phenotype (ST Elevation Myocardial Infarction, Non-ST Elevation Myocardial Infarction, Unstable Angina), severity and treatment data | In all, 120 fields most with multiple response categories, as defined by the MINAP steering group | Recorded usually by audit nurse, days or weeks after admission, by abstracting data from hospital records |
| Secondary care: HES | National data warehouse of hospitalizations recorded for administrative purposes Inpatient, outpatient, emergency, critical care and maternity admissions Operations and surgical procedures | Up to 20 primary and secondary discharge diagnoses recorded using ICD-10 Up to 24 codes using the Office of Population, Censuses and Surveys Classification of Surgical Operations and Procedures and used for operations The 4th revision (OPCS-4) contains ∼10 000 codes | Recorded by non-clinical trained coders based on the discharge summary weeks after discharge |
| Mortality: ONS | National census of all deaths Primary and underlying cause of death | The primary, underlying and up to 14 secondary causes of death are recorded using ICD-10 | Doctor (general practitioner or hospital) completes death certificate with cause of death. ICD codes added by trained non-clinical coders |
aEmergency, critical care and maternity data not included in CALIBER for now.
Figure 1Longitudinal nature of multiple linked data sources in CALIBER. ECG = Electrocardiography, STEMI = ST-segment elevation Myocardial Infarction, ACEI = Angiotensin-converting-enzyme Inhibitor
Figure 2The CALIBER framework of transforming raw electronic health record data into usable research-ready data sets
Figure 3Example of a CALIBER cohort showing initial presentation of specific cardiac endpoints (n = 32 390) with counts and sources. Appendix A illustrates the approach to defining cardiovascular diseases using multiple record sources in CALIBER
Figure 4Example of CALIBER research projects registered in the public domain
Figure 5Example of one CALIBER research variable, hypertension, created from multiple raw electronic health record sources. The variable uses a combination of (i) repeat continuous blood pressure measurements; (ii) categorical data on measured blood pressure (over 130 Read codes); (iii) hypertension diagnosis in primary care (over 180 Read codes); and (iv) prescription of blood pressure lowering medications
Overview of codes used to define a range of common CVDs. Details of how these codes are combined are given in the data portal. We provide a list of indicative diagnostic codes used across the data sources and not an exhaustive list
| Endpoint | Primary care | Disease Registry | Hospital procedures | Hospital diagnoses | Causes of death |
|---|---|---|---|---|---|
| CPRD | MINAP | HES | HES | ONS | |
| Read codes | Registry specific | OPCS-4 | ICD-10 | ICD-10 | |
| Acute myocardial infarction | G30X000 Acute ST segment EMI G307100 Acute non-ST segment EMI G30.14 Heart attack, G30.15 MI Acute myocardial infarction + 60 other codes as acute myocardial infarction Not Otherwise Specified | MI with or without ST elevation based on initial ECG findings, raised troponins and clinical diagnosis | Not used (there is no code that is specific to primary coronary intervention) | Acute myocardial infarction I21, Current complications of acute myocardial infarction I23 | Acute myocardial infarction I21, Current complications of acute myocardial infarction I23 |
| Unstable angina | G311.13/G311100 Unstable angina, G233200 Angina at rest, G311400 Worsening angina + 13 other codes | Discharge diagnosis of unstable angina, no raised ST elevationNo raised troponin levels | nu | Unstable or worsening angina I20.0 Acute ischaemic heart disease I24, Coronary thrombosis not resulting in myocardial infarction I24.0, Other forms of ischaemic heart disease I24.8, Acute ischaemic heart disease, unspecified I24.9 | nu |
| Stable angina | G33..00 Stable Angina, G33z.00 Angina pectoris NOS + 25 other codes for diagnosis of stable angina pectoris 30 codes for evidence of coronary artery disease at angiography (CT,MR, invasive or not specified) 151 Read codes for evidence of myocardial ischaemia (Resting ECG, exercise ECG, stress echo, radioisotope scan) Two or more successive prescriptions for anti-anginals | nu | Coronary Artery Bypass Graft (CABG) K40-K46 or Percutaneous Coronary Intervention (PCI) K49,K50,K75, not within 30 days of an ACS | Stable angina pectoris I20 excluding unstable angina I20.0 | nu |
| Coronary heart disease not otherwise specified | G3…00 Ischaemic Heart Disease + 90 other codes including CHD NOS, chronic ischaemic heart disease, silent myocardial infarction | nu | nu | CHD NOS, chronic ischaemic heart disease, silent myocardial infarction I25 excluding I25.2, old myocardial infarction | nu |
| Heart failure | G58.00 Heart Failure + 92 other Read codes for heart failure diagnosis | nu | nu | I50 Heart failure(including all sub, I11.0 Hypertensive heart disease with (congestive) heart failure, I13.0 Hypertensive heart and renal disease with (congestive) heart failure, I13.2 Hypertensive heart and renal disease with both (congestive) heart failure and renal disease | I50 Heart failure I11.0 Hypertensive heart disease with (congestive) heart failure, I13.0 Hypertensive heart and renal disease with (congestive) heart failure, I13.2 Hypertensive heart and renal disease with both (congestive) heart failure and renal disease |
| Ventricular arrhythmias, cardiac arrest and sudden cardiac death | G574.00 Ventricular fibrillation and flutter, G757.00 Cardiac arrest + 35 other Read codes for ventricular fibrillation, asystole, cardiac arrest, cardiac resuscitation, electro-mechanical dissociation, G575100 Sudden cardiac death, so described | nu | Implanted cardiac defibrillation device X50, Implantation, revision and renewal of cardiac defibrillator K59 | I46 (cardiac arrest) I47.0 (re-entry ventricular arrhythmia) I47.2 (ventricular tachycardia) | I46 (cardiac arrest, includes I46.1 sudden cardiac death) I47.0 (re-entry ventricular arrhythmia) I47.2 (ventricular tachycardia) |
| Unheralded coronary death | Any CVD excluded | Any CVD excluded | Any CVD excluded | Any CVD excluded | I20 Angina Pectoris, I21 Acute myocardial infarction, I22 Subsequent myocardial infarction, I23 Certain current complications following acute myocardial infarction, I24 Other acute ischaemic heart diseases and I25 Chronic ischaemic heart disease not preceded by any other CVD presentation |
| Ischaemic stroke | G64.11 CVA – cerebral artery occlusion, G64.13 Stroke due to cerebral arterial occlusion, G6W.00 Cereb infarct due unspecified occlusion/stenosis of precerebral arteries, G6X.00 cerebral infarction due to unspecified occlusion or stenosis of cerebral arteries plus 8 other codes | nu | nu | I63 cerebral infarction | I63 cerebral infarction |
| Haemorrhagic stroke | 93 codes for subarachnoid haemorrhage, intracerebral haemorrhage, and intracranial haemorrhage not otherwise specified | nu | I60 Subarachnoid haemorrhage, I61.0 Intracerebral haemorrhage in hemisphere, subcortical, I61.1 Intracerebral haemorrhage in hemisphere, cortical, I61.2 Intracerebral haemorrhage in hemisphere unspecified, I61.3 Intracerebral haemorrhage in brain stem, I61.4 Intracerebral hemorrhage in cerebellum, I61.5 Intracerebral haemorrhage intraventricular, I61.6 Intracerebral haemorrhage, multiple localized, I61.8 Other intracerebral haemorrhage, I61.9 Intracerebral haemorrhage | nu | |
| Peripheral arterial disease | 72 codes for Lower limb peripheral arterial disease diagnosis (including diabetic peripheral arterial disease, gangrene and intermittent claudication Evidence of atherosclerosis of iliac and lower limb arteries based on angiography or Dopplers | nu | L50-L54 Bypass, reconstruction and other open operations on iliac artery L58-L60, L62 Bypass, reconstruction, transluminal operations or other open operations of femoral artery, L65 Revision of reconstruction of artery | I70.2 atherosclerosis of arteries of extremities, I73.9 peripheral vascular disease intermittent claudication Peripheral complications of diabetes including gangrene 0.5 suffix of E10 Insulting dependent diabetes mellitus, E11 Non-insulin-dependent diabetes mellitus, E12 Malnutrition-related diabetes mellitus, E13 Other specified diabetes mellitus, E14 Unspecified diabetes mellitus | I70.2 atherosclerosis of arteries of extremities, I73.9 peripheral vascular disease intermittent claudication, Peripheral complications of diabetes including gangrene 0.5 suffix of E10 Insulting dependent diabetes mellitus, E11 Non-insulin-dependent diabetes mellitus, E12 Malnutrition-related diabetes mellitus, E13 Other specified diabetes mellitus, E14 Unspecified diabetes mellitus |
| Abdominal aortic aneurysm (AAA) | G714.00 Abdominal aortic aneurysm without mention of rupture + 11 more codes for AAA diagnosis. 13 codes for evidence of AAA on ultrasound or CT scan | nu | L16 Extra anatomic bypass of aorta, L18-L23 Replacement of aneurysmal segment of aorta, bypass of segment of aorta, plastic repair of aorta, L25-L28 Transluminal or endovascular insertion of stent on aneurysmal segment of aorta | I71.3 Abdominal aortic aneurysm, ruptured. 171.4 AAA, without rupture | I71.3 Abdominal aortic aneurysm, ruptured. 171.4 AAA, without rupture |
aPrimary cause of admission.
bUnderlying cause of death.
Nu, not used in definition.