Literature DB >> 23220516

A reconsideration of Gallicolumba (Aves: Columbidae) relationships using fresh source material reveals pseudogenes, chimeras, and a novel phylogenetic hypothesis.

Robert G Moyle1, Robin M Jones, Michael J Andersen.   

Abstract

Phylogenetic analyses of nuclear and mitochondrial DNA sequences were used to test a recent phylogenetic hypothesis for the avian genus Gallicolumba that relied heavily on preserved museum study skins for DNA samples. Our comparisons show that several published gene sequences represent pseudogenes or chimeras of multiple taxa, and these sequences had an adverse influence on phylogeny estimation. A new phylogenetic hypothesis strongly supports the monophyly of Philippine bleeding-hearts, the monophyly of Gallicolumba sensu stricto, and places Leucosarcia as part of an Australasian radiation rather than sister to Alopecoenas. These findings clarify Gallicolumba biogeography and also highlight the need for greater caution in the use of suboptimal source material in molecular systematic studies.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 23220516     DOI: 10.1016/j.ympev.2012.11.024

Source DB:  PubMed          Journal:  Mol Phylogenet Evol        ISSN: 1055-7903            Impact factor:   4.286


  6 in total

1.  Dispersal has inhibited avian diversification in Australasian archipelagoes.

Authors:  Brian C Weeks; Santiago Claramunt
Journal:  Proc Biol Sci       Date:  2014-09-22       Impact factor: 5.349

2.  Rapid diversification and secondary sympatry in Australo-Pacific kingfishers (Aves: Alcedinidae: Todiramphus).

Authors:  Michael J Andersen; Hannah T Shult; Alice Cibois; Jean-Claude Thibault; Christopher E Filardi; Robert G Moyle
Journal:  R Soc Open Sci       Date:  2015-02-04       Impact factor: 2.963

3.  Whole mitochondrial genomes unveil the impact of domestication on goat matrilineal variability.

Authors:  Licia Colli; Hovirag Lancioni; Irene Cardinali; Anna Olivieri; Marco Rosario Capodiferro; Marco Pellecchia; Marcin Rzepus; Wahid Zamani; Saeid Naderi; Francesca Gandini; Seyed Mohammad Farhad Vahidi; Saif Agha; Ettore Randi; Vincenza Battaglia; Maria Teresa Sardina; Baldassare Portolano; Hamid Reza Rezaei; Petros Lymberakis; Frédéric Boyer; Eric Coissac; François Pompanon; Pierre Taberlet; Paolo Ajmone Marsan; Alessandro Achilli
Journal:  BMC Genomics       Date:  2015-12-29       Impact factor: 3.969

4.  Complete mitochondrial genomes of living and extinct pigeons revise the timing of the columbiform radiation.

Authors:  André E R Soares; Ben J Novak; James Haile; Tim H Heupink; Jon Fjeldså; M Thomas P Gilbert; Hendrik Poinar; George M Church; Beth Shapiro
Journal:  BMC Evol Biol       Date:  2016-10-26       Impact factor: 3.260

5.  Fixing Formalin: A Method to Recover Genomic-Scale DNA Sequence Data from Formalin-Fixed Museum Specimens Using High-Throughput Sequencing.

Authors:  Sarah M Hykin; Ke Bi; Jimmy A McGuire
Journal:  PLoS One       Date:  2015-10-27       Impact factor: 3.240

6.  Sharp Increase of Problematic Mitogenomes of Birds: Causes, Consequences, and Remedies.

Authors:  George Sangster; Jolanda A Luksenburg
Journal:  Genome Biol Evol       Date:  2021-09-01       Impact factor: 3.416

  6 in total

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