Literature DB >> 23214819

Modeling the mechanical properties of DNA nanostructures.

Jean Michel Arbona1, Jean-Pierre Aimé, Juan Elezgaray.   

Abstract

We discuss generalizations of a previously published coarse-grained description [Mergell et al., Phys. Rev. E 68, 021911 (2003)] of double stranded DNA (dsDNA). The model is defined at the base-pair level and includes the electrostatic repulsion between neighbor helices. We show that the model reproduces mechanical and elastic properties of several DNA nanostructures (DNA origamis). We also show that electrostatic interactions are necessary to reproduce atomic force microscopy measurements on planar DNA origamis.

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Year:  2012        PMID: 23214819     DOI: 10.1103/PhysRevE.86.051912

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  9 in total

1.  DNA nanostructures: a shift from assembly to applications.

Authors:  Laura A Lanier; Harry Bermudez
Journal:  Curr Opin Chem Eng       Date:  2015-02-01       Impact factor: 5.163

2.  Kinetics of DNA tile dimerization.

Authors:  Shuoxing Jiang; Hao Yan; Yan Liu
Journal:  ACS Nano       Date:  2014-05-07       Impact factor: 15.881

3.  A coarse-grained model for DNA origami.

Authors:  Roman V Reshetnikov; Anastasia V Stolyarova; Arthur O Zalevsky; Dmitry Y Panteleev; Galina V Pavlova; Dmitry V Klinov; Andrey V Golovin; Anna D Protopopova
Journal:  Nucleic Acids Res       Date:  2018-02-16       Impact factor: 16.971

Review 4.  Insights into the Structure and Energy of DNA Nanoassemblies.

Authors:  Andreas Jaekel; Pascal Lill; Stephen Whitelam; Barbara Saccà
Journal:  Molecules       Date:  2020-11-24       Impact factor: 4.411

5.  Ionic permeability and mechanical properties of DNA origami nanoplates on solid-state nanopores.

Authors:  Calin Plesa; Adithya N Ananth; Veikko Linko; Coen Gülcher; Allard J Katan; Hendrik Dietz; Cees Dekker
Journal:  ACS Nano       Date:  2013-12-05       Impact factor: 15.881

6.  Shape and Interhelical Spacing of DNA Origami Nanostructures Studied by Small-Angle X-ray Scattering.

Authors:  Stefan Fischer; Caroline Hartl; Kilian Frank; Joachim O Rädler; Tim Liedl; Bert Nickel
Journal:  Nano Lett       Date:  2016-06-08       Impact factor: 11.189

7.  Binary control of enzymatic cleavage of DNA origami by structural antideterminants.

Authors:  Alex Stopar; Lucia Coral; Stefano Di Giacomo; Abimbola F Adedeji; Matteo Castronovo
Journal:  Nucleic Acids Res       Date:  2018-01-25       Impact factor: 16.971

8.  Sites of high local frustration in DNA origami.

Authors:  Richard Kosinski; Ann Mukhortava; Wolfgang Pfeifer; Andrea Candelli; Philipp Rauch; Barbara Saccà
Journal:  Nat Commun       Date:  2019-03-05       Impact factor: 14.919

9.  Coarse-grained modelling of the structural properties of DNA origami.

Authors:  Benedict E K Snodin; John S Schreck; Flavio Romano; Ard A Louis; Jonathan P K Doye
Journal:  Nucleic Acids Res       Date:  2019-02-20       Impact factor: 16.971

  9 in total

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