| Literature DB >> 23209686 |
Ge Xu1, Qiang Mei, Daijun Zhou, Jinlin Wu, Luo Han.
Abstract
BACKGROUND: A series of studies have been conducted to evaluate the associations between vitamin D receptor (VDR) and aggrecan variable numbers of tandem repeat (VNTR) polymorphisms and the risk of intervertebral disc degeneration (IDD), but produced conflicting results.Entities:
Mesh:
Substances:
Year: 2012 PMID: 23209686 PMCID: PMC3509154 DOI: 10.1371/journal.pone.0050243
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Flow chart of study selection based on the inclusion and exclusion criteria.
Characteristics of individual studies for associations between VDR polymorphisms and IDD risks.
| Authors | Year | Country | Ethnicity | Gender | Age | Genotypes distribution |
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| Case | control | |||||||||||
| 11 | 12 | 22 | 11 | 12 | 22 | |||||||
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| Chen | 2012 | China | Asian | Both | 40.3 | 0 | 2 | 79 | 1 | 14 | 86 | 0.617 |
| Eskola | 2010 | Danmark | Caucasian | Both | 13.1 | 9 | 28 | 29 | 23 | 74 | 57 | 0.898 |
| Yuan | 2010 | China | Asian | Both | 43.63 | 0 | 22 | 156 | 0 | 28 | 256 | 0.382 |
| Eser | 2010 | Turkey | Caucasian | NA | 20–30 | NA | NA | NA | ||||
| Cheung | 2006 | China | Asian | Both | 18–55 | 1 | 33 | 354 | 0 | 8 | 183 | 0.768 |
| Noponen-Hietala | 2003 | Filand | Caucasian | Both | 48.5 | 6 | 11 | 12 | 11 | 19 | 26 | 0.044 |
| Oishi | 2003 | Japan | Asian | Women | 73.2 | 0 | 8 | 31 | 0 | 5 | 16 | 0.536 |
| Kawaguchi | 2002 | Japan | Asian | Both | 22 | 0 | 37 | 79 | 0 | 17 | 72 | 0.319 |
| Jones | 1998 | Australia | Caucasian | Both | 69.5 | OR, 95%CI: 0.47 (0.19–1.16) | NA | |||||
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| Kelempisioti | 2011 | Filand | Caucasian | Both | 40.3 | 12 | 51 | 18 | 17 | 48 | 36 | 0.032 |
| Eskola | 2010 | Danmark | Caucasian | Both | 13.1 | 9 | 28 | 29 | 23 | 74 | 57 | 0.898 |
| Eser | 2010 | Turkey | Caucasian | NA | 20–30 | NA | NA | NA | ||||
| Chen | 2007 | China | Asian | Both | 40.3 | 12 | 51 | 18 | 17 | 48 | 36 | 0.883 |
| Noponen-Hietala | 2003 | Filand | Caucasian | Both | 48.5 | 6 | 12 | 11 | 5 | 26 | 25 | 0.630 |
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| Chen | 2012 | China | Asian | Both | 40.3 | 44 | 28 | 9 | 43 | 46 | 12 | 0.945 |
| Yuan | 2010 | China | Asian | Both | 43.6 | 58 | 100 | 20 | 128 | 129 | 27 | 0.500 |
| Kawaguchi | 2002 | Japan | Asian | Both | 22 | 51 | 48 | 17 | 41 | 39 | 9 | 0.951 |
the mean age and/or the range of age;
11,12,22 represent tt, Tt, TT for TaqI(rs731236), ff, Ff, FF for FokI (rs2228570), and aa, Aa, AA for ApaI (rs7975232), respectively.
p for Hardy–Weinberg equilibrium test in controls;
“NA” means that the data were not available.
Characteristics of individual studies for association between aggrecan VNTR polymorphism and IDD risk.
| Authors | Year | Country | Ethnicity | Gender | Age | Alleles (most common one) | Case allels | Control allels | ||
| ≦25 | >25 | ≦25 | >25 | |||||||
| Kim | 2011 | Korean | Asian | Both | <40 | 21;22;23;24;25;26;27;28;33;36 (27) | 22 | 64 | 3 | 21 |
| Eser | 2011 | Turkey | Caucasian | Both | 22.3(20–30) | 13;21;22;25;26;27;28;29;32 (28) | 27 | 73 | 19 | 81 |
| Mashayekhi | 2010 | Iran | Caucasian | Both | 36(28–52) | 18;19;20;21;22;23;24;25;26;27;28;29 (27) | 33 | 38 | 20 | 88 |
| Eser | 2010 | Turkey | Caucasian | Men | 20–30 | 13;19;21;22;25;26;27;28;29;32;33 (27) | 73 | 227 | 55 | 245 |
| Cong | 2010 | China | Asian | Men | 36.0(14–49) | 18;19;20;21;22;23;24;25;26;27;28;29;30;31;32;33 (27) | 70 | 70 | 92 | 162 |
| Solovieva | 2007 | Filand | Caucasian | Men | 44(41–46) | 21;22;24;25;26;27;28;29;32 (26) | 11 | 19 | 47 | 185 |
| Kawaguchi | 1999 | Japan | Asian | Women | 21.3(20–29) | 18;21;22;25;26;27;28;29 (27) | 11 | 53 | 5 | 59 |
the mean age and/or the range of age;
the variable numbers of tandem repeat(VNTR) alleles detected, and the most common form.
the VNTR numbers.
Summary of ORs for various genetic contrasts on the associations between VDR polymorphisms and the risks of IDD.
| Sub-group | Test of association | Test of heterogenecity | ||||
| OR | 95%CI | Statistical model |
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| t | Caucasian | 0.982 | 0.769–1.255 | FEM | 0.0 | 0.649 |
| Asian | 1.137 | 0.599–2.158 | REM | 66.2 | 0.019 | |
| >40 | 1.161 | 0.773–1.742 | FEM | 0.0 | 0.830 | |
| ≦40 | 0.928 | 0.546–1.576 | REM | 72.3 | 0.013 | |
| Women | 0.787 | 0.505–1.228 | FEM | 0.0 | 0.549 | |
| men | 1.172 | 0.715–1.918 | FEM | 0.0 | 0.829 | |
| Both | 1.160 | 0.688–1.954 | REM | 68.0 | 0.014 | |
| all | 1.109 | 0.803–1.533 | REM | 52.8 | 0.038 | |
| Tt/tt | Caucasian | 0.754 | 0.489–1.162 | FEM | 7.4 | 0.340 |
| Asian | 1.158 | 0.595–2.253 | REM | 66.0 | 0.019 | |
| >40 | 1.003 | 0.685–1.470 | FEM | 0.0 | 0.448 | |
| ≦40 | 1.135 | 0.375–3.431 | REM | 83.7 | 0.000 | |
| Women | 0.770 | 0.453–1.309 | FEM | 0.0 | 0.424 | |
| men | 1.211 | 0.658–2.226 | FEM | 0.0 | 0.849 | |
| Both | 0.949 | 0.424–2.124 | REM | 75.3 | 0.003 | |
| all | 0.991 | 0.617–1.591 | REM | 62.2 | 0.010 | |
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| f | 0.929 | 0.779–1.109 | FEM | 25.7 | 0.250 | |
| ff | 1.146 | 0.719–1.826 | FEM | 0.0 | 0.467 | |
| Ff/ff | 1.012 | 0.621–1.649 | REM | 60.7 | 0.054 | |
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| a | 0.914 | 0.649–1.288 | REM | 60.1 | 0.082 | |
| aa | 0.757 | 0.477–1.202 | FEM | 0.0 | 0.379 | |
| aa | 0.924 | 0.516–1.653 | REM | 74.7 | 0.019 | |
p value for heterogeneity based on Q test; FEM, fixed effect model. REM, random effect model.
Figure 2Meta-analysis for VDR TaqI polymorphism and the risk of IDD (t vs.T).
Each study was shown by a point estimate of the effect size (OR) (size inversely proportional to its variance) and its 95% confidence interval (95%CI) (horizontal lines). The white diamond denotes the pooled OR.
Summary of ORs for various genetic contrasts on the association between aggrecan VNTR polymorphism and IDD risk.
| Sub-group | No. of studies | Test of association | Test of heterogenecity | |||||
| OR | 95%CI |
| Statistical model |
|
| |||
| ≦25 | Caucasian | 4 | 2.006 | 1.468–2.450 | 0.003 | REM | 54.2 | 0.088 |
| Asian | 3 | 1.887 | 1.298–2.744 | 0.001 | FEM | 0.0 | 0.800 | |
| >30 | 3 | 2.199 | 1.591–3.040 | 0.000 | FEM | 45.6 | 0.159 | |
| ≦30 | 3 | 1.537 | 1.112–2.124 | 0.009 | FEM | 0.0 | 0.673 | |
| Women | 1 | 2.449 | 0.799–7.508 | 0.117 | FEM | — | — | |
| men | 3 | 1.636 | 1.248–2.145 | 0.000 | FEM | 0.0 | 0.549 | |
| Both | 3 | 2.426 | 1.558–3.778 | 0.000 | FEM | 40.4 | 0.187 | |
| All | 7 | 1.850 | 1.477–2.318 | 0.000 | FEM | 14.4 | 0.320 | |
| ≦23 | Caucasian | 3 | 2.197 | 1.450–3.329 | 0.000 | FEM | 0.0 | 0.494 |
| Asian | 3 | 1.618 | 0.960–2.727 | 0.071 | FEM | 0.0 | 0.747 | |
| >30 | 3 | 1.986 | 1.271–3.103 | 0.003 | FEM | 23.3 | 0.271 | |
| ≦30 | 2 | 1.845 | 1.137–2.992 | 0.013 | FEM | 0.0 | 0.924 | |
| Women | 1 | 1.723 | 0.394–7.535 | 0.470 | FEM | — | — | |
| men | 3 | 1.691 | 1.157–2.471 | 0.007 | FEM | 0.0 | 0.966 | |
| Both | 2 | 3.241 | 1.590–6.606 | 0.001 | FEM | 0.0 | 0.830 | |
| All | 6 | 1.955 | 1.414–2.703 | 0.000 | FEM | 0.0 | 0.710 | |
p value for heterogeneity based on Q test; FEM, fixed effect model. REM, random effect model.
Figure 3Meta-analysis for aggrecan VNTR polymorphism and the risk of IDD (≦25 vs. >25).
Each study was shown by a point estimate of the effect size (OR) (size inversely proportional to its variance) and its 95% confidence interval (95%CI) (horizontal lines). The white diamond denotes the pooled OR.
Figure 4Begg's funnel plot with the Egger's test for publication bias of VDR (TaqI, FokI, ApaI) and aggrecan VNTR polymorphisms and the risk of IDD.
The horizontal line in the funnel plot indicates the fixed-effects summary estimate, whereas the diagonal lines pseudo-95% CI limits about the effect estimate. In the absence of publication bias, studies will be distributed symmetrically above and below the horizontal line.