Literature DB >> 23209249

Complete sequence of the first chimera genome constructed by cloning the whole genome of Synechocystis strain PCC6803 into the Bacillus subtilis 168 genome.

Satoru Watanabe1, Yuh Shiwa, Mitsuhiro Itaya, Hirofumi Yoshikawa.   

Abstract

Genome synthesis of existing or designed genomes is made feasible by the first successful cloning of a cyanobacterium, Synechocystis PCC6803, in Gram-positive, endospore-forming Bacillus subtilis. Whole-genome sequence analysis of the isolate and parental B. subtilis strains provides clues for identifying single nucleotide polymorphisms (SNPs) in the 2 complete bacterial genomes in one cell.

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Year:  2012        PMID： 23209249      PMCID： PMC3510552          DOI： 10.1128/JB.01798-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  4 in total

1.  Combining two genomes in one cell: stable cloning of the Synechocystis PCC6803 genome in the Bacillus subtilis 168 genome.

Authors:  Mitsuhiro Itaya; Kenji Tsuge; Maki Koizumi; Kyoko Fujita
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-18       Impact factor: 11.205

2.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

3.  Chromosomal rearrangement generating a composite gene for a developmental transcription factor.

Authors:  P Stragier; B Kunkel; L Kroos; R Losick
Journal:  Science       Date:  1989-01-27       Impact factor: 47.728

4.  Versatile and open software for comparing large genomes.

Authors:  Stefan Kurtz; Adam Phillippy; Arthur L Delcher; Michael Smoot; Martin Shumway; Corina Antonescu; Steven L Salzberg
Journal:  Genome Biol       Date:  2004-01-30       Impact factor: 13.583
  4 in total
  6 in total

1.  Antiviral activity of bacterial TIR domains via immune signalling molecules.

Authors:  Gal Ofir; Ehud Herbst; Maya Baroz; Daniel Cohen; Adi Millman; Shany Doron; Nitzan Tal; Daniel B A Malheiro; Sergey Malitsky; Gil Amitai; Rotem Sorek
Journal:  Nature       Date:  2021-12-01       Impact factor: 69.504

2.  RefSeq microbial genomes database: new representation and annotation strategy.

Authors:  Tatiana Tatusova; Stacy Ciufo; Boris Fedorov; Kathleen O'Neill; Igor Tolstoy
Journal:  Nucleic Acids Res       Date:  2013-12-06       Impact factor: 16.971

3.  A molecular phylogenetic framework for Bacillus subtilis using genome sequences and its application to Bacillus subtilis subspecies stecoris strain D7XPN1, an isolate from a commercial food-waste degrading bioreactor.

Authors:  Joseph Adelskov; Bharat K C Patel
Journal:  3 Biotech       Date:  2016-03-28       Impact factor: 2.406

4.  Challenging a bioinformatic tool's ability to detect microbial contaminants using in silico whole genome sequencing data.

Authors:  Nathan D Olson; Justin M Zook; Jayne B Morrow; Nancy J Lin
Journal:  PeerJ       Date:  2017-09-12       Impact factor: 2.984

Review 5.  Membrane transporters in the bioproduction of organic acids: state of the art and future perspectives for industrial applications.

Authors:  I Soares-Silva; D Ribas; M Sousa-Silva; J Azevedo-Silva; T Rendulić; M Casal
Journal:  FEMS Microbiol Lett       Date:  2020-08-01       Impact factor: 2.742

6.  Assembly of eukaryotic algal chromosomes in yeast.

Authors:  Bogumil J Karas; Bhuvan Molparia; Jelena Jablanovic; Wolfgang J Hermann; Ying-Chi Lin; Christopher L Dupont; Christian Tagwerker; Isaac T Yonemoto; Vladimir N Noskov; Ray-Yuan Chuang; Andrew E Allen; John I Glass; Clyde A Hutchison; Hamilton O Smith; J Craig Venter; Philip D Weyman
Journal:  J Biol Eng       Date:  2013-12-10       Impact factor: 4.355
  6 in total

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