Literature DB >> 23209242

Genome sequence of the pathogenic Herbaspirillum seropedicae strain Os45, isolated from rice roots.

Bo Zhu1, Shuting Ye, Siping Chang, Mingyue Chen, Li Sun, Qianli An.   

Abstract

Most Herbaspirillum seropedicae strains are beneficial to plants. In contrast, H. seropedicae strain Os45, isolated from rice roots, is pathogenic. The draft genome sequence of strain Os45 presented here allows an in-depth comparative genome analysis to understand the subtle mechanisms of beneficial and pathogenic Herbaspirillum-plant interactions.

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Year:  2012        PMID： 23209242      PMCID： PMC3510570          DOI： 10.1128/JB.01935-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

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3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

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Authors:  Z Li; S Chang; L Lin; Y Li; Q An
Journal:  Lett Appl Microbiol       Date:  2011-06-09       Impact factor: 2.858

5.  Infection and colonization of rice seedlings by the plant growth-promoting bacterium Herbaspirillum seropedicae Z67.

Authors:  Euan K James; Prasad Gyaneshwar; Natarajan Mathan; Wilfredo L Barraquio; Pallavolu M Reddy; Pietro P M Iannetta; Fabio L Olivares; Jagdish K Ladha
Journal:  Mol Plant Microbe Interact       Date:  2002-09       Impact factor: 4.171

6.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
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7.  Genome sequence of the pathogenic Herbaspirillum seropedicae strain Os34, isolated from rice roots.

Authors:  Weijun Ye; Shuting Ye; Jian Liu; Siping Chang; Mingyue Chen; Bo Zhu; Longbiao Guo; Qianli An
Journal:  J Bacteriol       Date:  2012-12       Impact factor: 3.490

8.  Toward almost closed genomes with GapFiller.

Authors:  Marten Boetzer; Walter Pirovano
Journal:  Genome Biol       Date:  2012-06-25       Impact factor: 13.583

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Authors:  Fábio O Pedrosa; Rose Adele Monteiro; Roseli Wassem; Leonardo M Cruz; Ricardo A Ayub; Nelson B Colauto; Maria Aparecida Fernandez; Maria Helena P Fungaro; Edmundo C Grisard; Mariangela Hungria; Humberto M F Madeira; Rubens O Nodari; Clarice A Osaku; Maria Luiza Petzl-Erler; Hernán Terenzi; Luiz G E Vieira; Maria Berenice R Steffens; Vinicius A Weiss; Luiz F P Pereira; Marina I M Almeida; Lysangela R Alves; Anelis Marin; Luiza Maria Araujo; Eduardo Balsanelli; Valter A Baura; Leda S Chubatsu; Helisson Faoro; Augusto Favetti; Geraldo Friedermann; Chirlei Glienke; Susan Karp; Vanessa Kava-Cordeiro; Roberto T Raittz; Humberto J O Ramos; Enilze Maria S F Ribeiro; Liu Un Rigo; Saul N Rocha; Stefan Schwab; Anilda G Silva; Eliel M Souza; Michelle Z Tadra-Sfeir; Rodrigo A Torres; Audrei N G Dabul; Maria Albertina M Soares; Luciano S Gasques; Ciela C T Gimenes; Juliana S Valle; Ricardo R Ciferri; Luiz C Correa; Norma K Murace; João A Pamphile; Eliana Valéria Patussi; Alberto J Prioli; Sonia Maria A Prioli; Carmem Lúcia M S C Rocha; Olívia Márcia N Arantes; Márcia Cristina Furlaneto; Leandro P Godoy; Carlos E C Oliveira; Daniele Satori; Laurival A Vilas-Boas; Maria Angélica E Watanabe; Bibiana Paula Dambros; Miguel P Guerra; Sandra Marisa Mathioni; Karine Louise Santos; Mario Steindel; Javier Vernal; Fernando G Barcellos; Rubens J Campo; Ligia Maria O Chueire; Marisa Fabiana Nicolás; Lilian Pereira-Ferrari; José L da Conceição Silva; Nereida M R Gioppo; Vladimir P Margarido; Maria Amélia Menck-Soares; Fabiana Gisele S Pinto; Rita de Cássia G Simão; Elizabete K Takahashi; Marshall G Yates; Emanuel M Souza
Journal:  PLoS Genet       Date:  2011-05-12       Impact factor: 5.917

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
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  4 in total

1.  Biochemical characteristics, adhesion, and cytotoxicity of environmental and clinical isolates of Herbaspirillum spp.

Authors:  Ana C Q Marques; Katia S Paludo; Cibelle B Dallagassa; Monica Surek; Fábio O Pedrosa; Emanuel M Souza; Leonardo M Cruz; John J LiPuma; Sílvio M Zanata; Fabiane G M Rego; Cyntia M T Fadel-Picheth
Journal:  J Clin Microbiol       Date:  2014-10-29       Impact factor: 5.948

2.  Genome sequence of the pathogenic Herbaspirillum seropedicae strain Os34, isolated from rice roots.

Authors:  Weijun Ye; Shuting Ye; Jian Liu; Siping Chang; Mingyue Chen; Bo Zhu; Longbiao Guo; Qianli An
Journal:  J Bacteriol       Date:  2012-12       Impact factor: 3.490

3.  The genome of the endophytic bacterium H. frisingense GSF30(T) identifies diverse strategies in the Herbaspirillum genus to interact with plants.

Authors:  Daniel Straub; Michael Rothballer; Anton Hartmann; Uwe Ludewig
Journal:  Front Microbiol       Date:  2013-06-27       Impact factor: 5.640

4.  Draft Genome Sequence of the Naphthalene Degrader Herbaspirillum sp. Strain RV1423.

Authors:  Ruy Jauregui; Belén Rodelas; Robert Geffers; Nico Boon; Dietmar H Pieper; Ramiro Vilchez-Vargas
Journal:  Genome Announc       Date:  2014-03-20
  4 in total

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