Literature DB >> 23209240

Genomic analysis of Rickettsia japonica strain YHT.

Xin Dong1, Khalid El Karkouri, Catherine Robert, Didier Raoult, Pierre-Edouard Fournier.   

Abstract

Rickettsia japonica strain YH, isolated in 1984 in Japan, is the type strain of R. japonica, the tick-borne agent of Japanese spotted fever. Here, we report the 1.33-Mb genome of this rickettsial species.

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Year:  2012        PMID： 23209240      PMCID： PMC3510609          DOI： 10.1128/JB.01928-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

Review 2.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

3.  Rickettsia japonica sp. nov., the etiological agent of spotted fever group rickettsiosis in Japan.

Authors:  T Uchida; T Uchiyama; K Kumano; D H Walker
Journal:  Int J Syst Bacteriol       Date:  1992-04

4.  Genetic identification of rickettsiae isolated from ticks in Japan.

Authors:  Pierre-Edouard Fournier; Hiromi Fujita; Nobuhiro Takada; Didier Raoult
Journal:  J Clin Microbiol       Date:  2002-06       Impact factor: 5.948

5.  Analysis of the Rickettsia africae genome reveals that virulence acquisition in Rickettsia species may be explained by genome reduction.

Authors:  Pierre-Edouard Fournier; Khalid El Karkouri; Quentin Leroy; Catherine Robert; Bernadette Giumelli; Patricia Renesto; Cristina Socolovschi; Philippe Parola; Stéphane Audic; Didier Raoult
Journal:  BMC Genomics       Date:  2009-04-20       Impact factor: 3.969

6.  Phylogenetic analysis of spotted fever group Rickettsiae isolated from ticks in Japan.

Authors:  Mitsuhiro Ishikura; Hiromi Fujita; Shuji Ando; Kumiko Matsuura; Mamoru Watanabe
Journal:  Microbiol Immunol       Date:  2002       Impact factor: 1.955

7.  Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data.

Authors:  Tim Carver; Simon R Harris; Matthew Berriman; Julian Parkhill; Jacqueline A McQuillan
Journal:  Bioinformatics       Date:  2011-12-22       Impact factor: 6.937

8.  The Pfam protein families database.

Authors:  Marco Punta; Penny C Coggill; Ruth Y Eberhardt; Jaina Mistry; John Tate; Chris Boursnell; Ningze Pang; Kristoffer Forslund; Goran Ceric; Jody Clements; Andreas Heger; Liisa Holm; Erik L L Sonnhammer; Sean R Eddy; Alex Bateman; Robert D Finn
Journal:  Nucleic Acids Res       Date:  2011-11-29       Impact factor: 16.971

Review 9.  Japanese spotted fever: report of 31 cases and review of the literature.

Authors:  F Mahara
Journal:  Emerg Infect Dis       Date:  1997 Apr-Jun       Impact factor: 6.883

10.  Reductive genome evolution from the mother of Rickettsia.

Authors:  Guillaume Blanc; Hiroyuki Ogata; Catherine Robert; Stéphane Audic; Karsten Suhre; Guy Vestris; Jean-Michel Claverie; Didier Raoult
Journal:  PLoS Genet       Date:  2007-01-19       Impact factor: 5.917
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  4 in total

Review 1.  Update on tick-borne rickettsioses around the world: a geographic approach.

Authors:  Philippe Parola; Christopher D Paddock; Cristina Socolovschi; Marcelo B Labruna; Oleg Mediannikov; Tahar Kernif; Mohammad Yazid Abdad; John Stenos; Idir Bitam; Pierre-Edouard Fournier; Didier Raoult
Journal:  Clin Microbiol Rev       Date:  2013-10       Impact factor: 26.132

2.  Extremely Low Genomic Diversity of Rickettsia japonica Distributed in Japan.

Authors:  Arzuba Akter; Tadasuke Ooka; Yasuhiro Gotoh; Seigo Yamamoto; Hiromi Fujita; Fumio Terasoma; Kouji Kida; Masakatsu Taira; Fumiko Nakadouzono; Mutsuyo Gokuden; Manabu Hirano; Mamoru Miyashiro; Kouichi Inari; Yukie Shimazu; Kenji Tabara; Atsushi Toyoda; Dai Yoshimura; Takehiko Itoh; Tomokazu Kitano; Mitsuhiko P Sato; Keisuke Katsura; Shakhinur Islam Mondal; Yoshitoshi Ogura; Shuji Ando; Tetsuya Hayashi
Journal:  Genome Biol Evol       Date:  2017-01-01       Impact factor: 3.416

3.  Complete genomic DNA sequence of the East Asian spotted fever disease agent Rickettsia japonica.

Authors:  Minenosuke Matsutani; Motohiko Ogawa; Naohisa Takaoka; Nozomu Hanaoka; Hidehiro Toh; Atsushi Yamashita; Kenshiro Oshima; Hideki Hirakawa; Satoru Kuhara; Harumi Suzuki; Masahira Hattori; Toshio Kishimoto; Shuji Ando; Yoshinao Azuma; Mutsunori Shirai
Journal:  PLoS One       Date:  2013-09-09       Impact factor: 3.240

4.  Rickettsia japonica Infections in Humans, Zhejiang Province, China, 2015.

Authors:  Qunying Lu; Jianping Yu; Liqun Yu; Yanjun Zhang; Yitao Chen; Meiai Lin; Xiaofei Fang
Journal:  Emerg Infect Dis       Date:  2018-11       Impact factor: 6.883
  4 in total

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