Literature DB >> 23209213

Genome sequence of strain IMCC14465, isolated from the East Sea, belonging to the PS1 clade of Alphaproteobacteria.

Seung-Jo Yang1, Ilnam Kang, Jang-Cheon Cho.   

Abstract

Strain IMCC14465 was isolated from surface seawater of the East Sea using dilution-to-extinction culturing. Phylogenetic analysis indicated that the strain belongs to the PS1 clade, which is closely related to the OCS116 clade in the Alphaproteobacteria. Here, we report the genome sequence of IMCC14465, the first isolate of the PS1 clade.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 23209213      PMCID: PMC3510553          DOI: 10.1128/JB.01888-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  11 in total

1.  Bacterial rhodopsin: evidence for a new type of phototrophy in the sea.

Authors:  O Béjà; L Aravind; E V Koonin; M T Suzuki; A Hadd; L P Nguyen; S B Jovanovich; C M Gates; R A Feldman; J L Spudich; E N Spudich; E F DeLong
Journal:  Science       Date:  2000-09-15       Impact factor: 47.728

2.  Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria.

Authors:  Jang-Cheon Cho; Stephen J Giovannoni
Journal:  Appl Environ Microbiol       Date:  2004-01       Impact factor: 4.792

3.  High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates.

Authors:  Stephanie A Connon; Stephen J Giovannoni
Journal:  Appl Environ Microbiol       Date:  2002-08       Impact factor: 4.792

4.  Untangling genomes from metagenomes: revealing an uncultured class of marine Euryarchaeota.

Authors:  Vaughn Iverson; Robert M Morris; Christian D Frazar; Chris T Berthiaume; Rhonda L Morales; E Virginia Armbrust
Journal:  Science       Date:  2012-02-03       Impact factor: 47.728

5.  Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site.

Authors:  Ulrich Stingl; Harry James Tripp; Stephen J Giovannoni
Journal:  ISME J       Date:  2007-07-05       Impact factor: 10.302

Review 6.  Proteorhodopsins: an array of physiological roles?

Authors:  Jed A Fuhrman; Michael S Schwalbach; Ulrich Stingl
Journal:  Nat Rev Microbiol       Date:  2008-05-13       Impact factor: 60.633

7.  Bacterial diversity among small-subunit rRNA gene clones and cellular isolates from the same seawater sample.

Authors:  M T Suzuki; M S Rappé; Z W Haimberger; H Winfield; N Adair; J Ströbel; S J Giovannoni
Journal:  Appl Environ Microbiol       Date:  1997-03       Impact factor: 4.792

8.  Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones.

Authors:  David A Walsh; Elena Zaikova; Charles G Howes; Young C Song; Jody J Wright; Susannah G Tringe; Philippe D Tortell; Steven J Hallam
Journal:  Science       Date:  2009-10-23       Impact factor: 47.728

9.  Environmental genome shotgun sequencing of the Sargasso Sea.

Authors:  J Craig Venter; Karin Remington; John F Heidelberg; Aaron L Halpern; Doug Rusch; Jonathan A Eisen; Dongying Wu; Ian Paulsen; Karen E Nelson; William Nelson; Derrick E Fouts; Samuel Levy; Anthony H Knap; Michael W Lomas; Ken Nealson; Owen White; Jeremy Peterson; Jeff Hoffman; Rachel Parsons; Holly Baden-Tillson; Cynthia Pfannkoch; Yu-Hui Rogers; Hamilton O Smith
Journal:  Science       Date:  2004-03-04       Impact factor: 47.728

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

View more
  2 in total

1.  Expansion of Cultured Bacterial Diversity by Large-Scale Dilution-to-Extinction Culturing from a Single Seawater Sample.

Authors:  Seung-Jo Yang; Ilnam Kang; Jang-Cheon Cho
Journal:  Microb Ecol       Date:  2015-11-14       Impact factor: 4.552

2.  Study on the Bacterial Communities of the Biofilms on Titanium, Aluminum, and Copper Alloys at 5,772 m Undersea in Yap Trench.

Authors:  Xiaofan Zhai; Wei Cao; Yimeng Zhang; Peng Ju; Juna Chen; Jizhou Duan; Chengjun Sun
Journal:  Front Microbiol       Date:  2022-03-18       Impact factor: 5.640

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.