Literature DB >> 23209200

Genome sequence and comparative genomics analysis of a Vibrio cholerae O1 strain isolated from a cholera patient in Malaysia.

Abdulrazak Osama1, Han Ming Gan, Cindy Shuan Ju Teh, Kien-Pong Yap, Kwai-Lin Thong.   

Abstract

The genome sequence analysis of a clinical Vibrio cholerae VC35 strain from an outbreak case in Malaysia indicates multiple genes involved in host adaptation and a novel Na(+)-driven multidrug efflux pump-coding gene in the genome of Vibrio cholerae with the highest similarity to VMA_001754 of Vibrio mimicus VMA223.

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Year:  2012        PMID： 23209200      PMCID： PMC3510581          DOI： 10.1128/JB.01832-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  9 in total

1.  Genetic variation analysis of Vibrio cholerae using multilocus sequencing typing and multi-virulence locus sequencing typing.

Authors:  Cindy Shuan Ju Teh; Kek Heng Chua; Kwai Lin Thong
Journal:  Infect Genet Evol       Date:  2011-04-12       Impact factor: 3.342

Review 2.  Emerging Vibrio species: an unending threat to public health in developing countries.

Authors:  Etinosa O Igbinosa; Anthony I Okoh
Journal:  Res Microbiol       Date:  2008-07-22       Impact factor: 3.992

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  The cadA gene of Vibrio cholerae is induced during infection and plays a role in acid tolerance.

Authors:  D S Merrell; A Camilli
Journal:  Mol Microbiol       Date:  1999-11       Impact factor: 3.501

5.  Molecular evidence of clonality amongst Vibrio cholerae O1 biotype El Tor during an outbreak in Malaysia.

Authors:  J Vadivelu; L Iyer; B M Kshatriya; S D Puthucheary
Journal:  Epidemiol Infect       Date:  2000-02       Impact factor: 2.451

6.  Multiple-locus variable-number tandem repeat analysis of Vibrio cholerae in comparison with pulsed field gel electrophoresis and virulotyping.

Authors:  Cindy Shuan Ju Teh; Kek Heng Chua; Kwai Lin Thong
Journal:  J Biomed Biotechnol       Date:  2010-06-30

7.  Outbreak-associated Vibrio cholerae genotypes with identical pulsotypes, Malaysia, 2009.

Authors:  Cindy Shuan Ju Teh; Zarizal Suhaili; King Ting Lim; Muhamad Afif Khamaruddin; Fariha Yahya; Mohd Hailmi Sajili; Chew Chieng Yeo; Kwai Lin Thong
Journal:  Emerg Infect Dis       Date:  2012-07       Impact factor: 6.883

8.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

9.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  9 in total
  1 in total

1.  Global MLST of Salmonella Typhi Revisited in Post-genomic Era: Genetic Conservation, Population Structure, and Comparative Genomics of Rare Sequence Types.

Authors:  Kien-Pong Yap; Wing S Ho; Han M Gan; Lay C Chai; Kwai L Thong
Journal:  Front Microbiol       Date:  2016-03-02       Impact factor: 5.640
  1 in total

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