Literature DB >> 23204522

The bacterial actin MamK: in vitro assembly behavior and filament architecture.

Ertan Ozyamak1, Justin Kollman, David A Agard, Arash Komeili.   

Abstract

It is now recognized that actin-like proteins are widespread in bacteria and, in contrast to eukaryotic actins, are highly diverse in sequence and function. The bacterial actin, MamK, represents a clade, primarily found in magnetotactic bacteria, that is involved in the proper organization of subcellular organelles, termed magnetosomes. We have previously shown that MamK from Magnetospirillum magneticum AMB-1 (AMB-1) forms dynamic filaments in vivo. To gain further insights into the molecular mechanisms that underlie MamK dynamics and function, we have now studied the in vitro properties of MamK. We demonstrate that MamK is an ATPase that, in the presence of ATP, assembles rapidly into filaments that disassemble once ATP is depleted. The mutation of a conserved active site residue (E143A) abolishes ATPase activity of MamK but not its ability to form filaments. Filament disassembly depends on both ATPase activity and potassium levels, the latter of which results in the organization of MamK filaments into bundles. These data are consistent with observations indicating that accessory factors are required to promote filament disassembly and for spatial organization of filaments in vivo. We also used cryo-electron microscopy to obtain a high resolution structure of MamK filaments. MamK adopts a two-stranded helical filament architecture, but unlike eukaryotic actin and other actin-like filaments, subunits in MamK strands are unstaggered giving rise to a unique filament architecture. Beyond extending our knowledge of the properties and function of MamK in magnetotactic bacteria, this study emphasizes the functional and structural diversity of bacterial actins in general.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 23204522      PMCID: PMC3567678          DOI: 10.1074/jbc.M112.417030

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  67 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Accurate determination of local defocus and specimen tilt in electron microscopy.

Authors:  Joseph A Mindell; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2003-06       Impact factor: 2.867

Review 3.  The bacterial cytoskeleton.

Authors:  Matthew T Cabeen; Christine Jacobs-Wagner
Journal:  Annu Rev Genet       Date:  2010       Impact factor: 16.830

4.  Structural basis for actin assembly, activation of ATP hydrolysis, and delayed phosphate release.

Authors:  Kenji Murakami; Takuo Yasunaga; Taro Q P Noguchi; Yuki Gomibuchi; Kien X Ngo; Taro Q P Uyeda; Takeyuki Wakabayashi
Journal:  Cell       Date:  2010-10-15       Impact factor: 41.582

5.  Magnetosomes are cell membrane invaginations organized by the actin-like protein MamK.

Authors:  Arash Komeili; Zhuo Li; Dianne K Newman; Grant J Jensen
Journal:  Science       Date:  2005-12-22       Impact factor: 47.728

6.  Structure and filament dynamics of the pSK41 actin-like ParM protein: implications for plasmid DNA segregation.

Authors:  David Popp; Weijun Xu; Akihiro Narita; Anthony J Brzoska; Ronald A Skurray; Neville Firth; Umesh Ghoshdastider; Umesh Goshdastider; Yuichiro Maéda; Robert C Robinson; Maria A Schumacher
Journal:  J Biol Chem       Date:  2010-01-27       Impact factor: 5.157

7.  MamK, a bacterial actin, forms dynamic filaments in vivo that are regulated by the acidic proteins MamJ and LimJ.

Authors:  Olga Draper; Meghan E Byrne; Zhuo Li; Sepehr Keyhani; Joyce Cueto Barrozo; Grant Jensen; Arash Komeili
Journal:  Mol Microbiol       Date:  2011-09-14       Impact factor: 3.501

8.  Architecture and assembly of a divergent member of the ParM family of bacterial actin-like proteins.

Authors:  Christopher R Rivera; Justin M Kollman; Jessica K Polka; David A Agard; R Dyche Mullins
Journal:  J Biol Chem       Date:  2011-02-21       Impact factor: 5.157

9.  The assembly of MreB, a prokaryotic homolog of actin.

Authors:  Osigwe Esue; Maria Cordero; Denis Wirtz; Yiider Tseng
Journal:  J Biol Chem       Date:  2004-11-16       Impact factor: 5.157

10.  Negative Staining and Image Classification - Powerful Tools in Modern Electron Microscopy.

Authors:  Melanie Ohi; Ying Li; Yifan Cheng; Thomas Walz
Journal:  Biol Proced Online       Date:  2004-03-19       Impact factor: 3.244

View more
  32 in total

Review 1.  From invagination to navigation: The story of magnetosome-associated proteins in magnetotactic bacteria.

Authors:  Shiran Barber-Zucker; Noa Keren-Khadmy; Raz Zarivach
Journal:  Protein Sci       Date:  2015-11-03       Impact factor: 6.725

2.  Interplay between two bacterial actin homologs, MamK and MamK-Like, is required for the alignment of magnetosome organelles in Magnetospirillum magneticum AMB-1.

Authors:  Nicole Abreu; Soumaya Mannoubi; Ertan Ozyamak; David Pignol; Nicolas Ginet; Arash Komeili
Journal:  J Bacteriol       Date:  2014-06-23       Impact factor: 3.490

3.  Archaeal actin from a hyperthermophile forms a single-stranded filament.

Authors:  Tatjana Braun; Albina Orlova; Karin Valegård; Ann-Christin Lindås; Gunnar F Schröder; Edward H Egelman
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-29       Impact factor: 11.205

4.  In search of the primordial actin filament.

Authors:  Umesh Ghoshdastider; Shimin Jiang; David Popp; Robert C Robinson
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-15       Impact factor: 11.205

Review 5.  Bacterial actins and their diversity.

Authors:  Ertan Ozyamak; Justin M Kollman; Arash Komeili
Journal:  Biochemistry       Date:  2013-09-24       Impact factor: 3.162

6.  Structure of the magnetosome-associated actin-like MamK filament at subnanometer resolution.

Authors:  Julien R C Bergeron; Rachel Hutto; Ertan Ozyamak; Nancy Hom; Jesse Hansen; Olga Draper; Meghan E Byrne; Sepehr Keyhani; Arash Komeili; Justin M Kollman
Journal:  Protein Sci       Date:  2016-08-19       Impact factor: 6.725

Review 7.  Magnetosome biogenesis in magnetotactic bacteria.

Authors:  René Uebe; Dirk Schüler
Journal:  Nat Rev Microbiol       Date:  2016-09-13       Impact factor: 60.633

Review 8.  Bacterial actin and tubulin homologs in cell growth and division.

Authors:  Kimberly K Busiek; William Margolin
Journal:  Curr Biol       Date:  2015-03-16       Impact factor: 10.834

Review 9.  Compartmentalization and organelle formation in bacteria.

Authors:  Elias Cornejo; Nicole Abreu; Arash Komeili
Journal:  Curr Opin Cell Biol       Date:  2014-01-16       Impact factor: 8.382

Review 10.  A Compass To Boost Navigation: Cell Biology of Bacterial Magnetotaxis.

Authors:  Frank D Müller; Dirk Schüler; Daniel Pfeiffer
Journal:  J Bacteriol       Date:  2020-10-08       Impact factor: 3.490

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.