Literature DB >> 23202583

Contribution of high-energy conformations to NMR chemical shifts, a DFT-BOMD study.

A Goursot1, T Mineva, J M Vásquez-Pérez, P Calaminici, A M Köster, D R Salahub.   

Abstract

This paper highlights the relevance of including the high-energy conformational states sampled by Born-Oppenheimer molecular dynamics (BOMD) in the calculation of time-averaged NMR chemical shifts. Our case study is the very flexible glycerol molecule that undergoes interconversion between conformers in a nonrandom way. Along the sequence of structures from one backbone conformer to another, transition states have been identified. The three (13)C NMR chemical shifts of the molecule were estimated by averaging their calculated values over a large set of BOMD snapshots. The simulation time needed to obtain a good agreement with the two signals present in the experimental spectrum is shown to be dependent on the atomic orbital basis set used for the dynamics, with a necessary longer trajectory for the most extended basis sets. The large structural deformations with respect to the optimized conformer geometries that occur along the dynamics are related to a kinetically driven conformer distribution. Calculated conformer type populations are in good agreement with experimental gas phase microwave results.

Entities:  

Year:  2013        PMID: 23202583     DOI: 10.1039/c2cp43514d

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  1 in total

1.  Metadynamics combined with auxiliary density functional and density functional tight-binding methods: alanine dipeptide as a case study.

Authors:  Jerome Cuny; Kseniia Korchagina; Chemseddine Menakbi; Tzonka Mineva
Journal:  J Mol Model       Date:  2017-02-15       Impact factor: 1.810

  1 in total

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