Literature DB >> 2320037

Tissue-specific and age-related variations in repetitive sequences of mouse extrachromosomal circular DNAs.

J W Gaubatz1, S C Flores.   

Abstract

Extrachromosomal circular (ecc) DNA was isolated from mouse brain, liver, and heart tissues at different ages. To determine the abundance of repetitive sequences in eccDNAs, preparations were probed for short-interspersed (B1 and B2), long-interspersed (L1), endogenous retroviral-like (IAP), and tandemly repeated satellite sequences (SAT) of the mouse genome. Together these sequence families comprise approximately 15% of the mouse genome. The hybridization results showed that each tissue had a characteristic pattern of repetitive sequence elements in eccDNAs, and the abundance of repetitive sequences changed as a function of age. Repetitive sequences decreased in liver and brain eccDNAs from 1 month to 8 months of age but appeared to remain stable thereafter. In contrast, repetitive sequence families in heart eccDNAs were constant from 1 month to 16 months of age but declined in 24-month-old mice. The present studies indicate that extrachromosomal sequences exhibit greater flexibility than chromosomal sequences.

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Year:  1990        PMID: 2320037     DOI: 10.1016/0921-8734(90)90029-q

Source DB:  PubMed          Journal:  Mutat Res        ISSN: 0027-5107            Impact factor:   2.433


  10 in total

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Journal:  Mol Diagn Ther       Date:  2018-10       Impact factor: 4.074

2.  Preference of the recombination sites involved in the formation of extrachromosomal copies of the human alphoid Sau3A repeat family.

Authors:  R Ohki; M Oishi; R Kiyama
Journal:  Nucleic Acids Res       Date:  1995-12-25       Impact factor: 16.971

3.  Loop-closure kinetics reveal a stable, right-handed DNA intermediate in Cre recombination.

Authors:  Massa J Shoura; Stefan M Giovan; Alexandre A Vetcher; Riccardo Ziraldo; Andreas Hanke; Stephen D Levene
Journal:  Nucleic Acids Res       Date:  2020-05-07       Impact factor: 16.971

4.  Hydra as a tractable, long-lived model system for senescence.

Authors:  Anthony J Bellantuono; Diane Bridge; Daniel E Martínez
Journal:  Invertebr Reprod Dev       Date:  2014-12-09       Impact factor: 0.952

5.  Intricate and Cell Type-Specific Populations of Endogenous Circular DNA (eccDNA) in Caenorhabditis elegans and Homo sapiens.

Authors:  Massa J Shoura; Idan Gabdank; Loren Hansen; Jason Merker; Jason Gotlib; Stephen D Levene; Andrew Z Fire
Journal:  G3 (Bethesda)       Date:  2017-10-05       Impact factor: 3.154

Review 6.  Extrachromosomal Circular DNA: Current Knowledge and Implications for CNS Aging and Neurodegeneration.

Authors:  Quratul Ain; Christian Schmeer; Diane Wengerodt; Otto W Witte; Alexandra Kretz
Journal:  Int J Mol Sci       Date:  2020-04-02       Impact factor: 5.923

7.  ECCsplorer: a pipeline to detect extrachromosomal circular DNA (eccDNA) from next-generation sequencing data.

Authors:  Ludwig Mann; Kathrin M Seibt; Beatrice Weber; Tony Heitkam
Journal:  BMC Bioinformatics       Date:  2022-01-14       Impact factor: 3.169

8.  Circular DNA elements of chromosomal origin are common in healthy human somatic tissue.

Authors:  Henrik Devitt Møller; Marghoob Mohiyuddin; Iñigo Prada-Luengo; M Reza Sailani; Jens Frey Halling; Peter Plomgaard; Lasse Maretty; Anders Johannes Hansen; Michael P Snyder; Henriette Pilegaard; Hugo Y K Lam; Birgitte Regenberg
Journal:  Nat Commun       Date:  2018-03-14       Impact factor: 14.919

9.  Near-Random Distribution of Chromosome-Derived Circular DNA in the Condensed Genome of Pigeons and the Larger, More Repeat-Rich Human Genome.

Authors:  Henrik Devitt Møller; Jazmín Ramos-Madrigal; Iñigo Prada-Luengo; M Thomas P Gilbert; Birgitte Regenberg
Journal:  Genome Biol Evol       Date:  2020-01-01       Impact factor: 3.416

Review 10.  Current understanding of extrachromosomal circular DNA in cancer pathogenesis and therapeutic resistance.

Authors:  Yuanliang Yan; Guijie Guo; Jinzhou Huang; Ming Gao; Qian Zhu; Shuangshuang Zeng; Zhicheng Gong; Zhijie Xu
Journal:  J Hematol Oncol       Date:  2020-09-14       Impact factor: 17.388

  10 in total

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