Literature DB >> 23196852

Event timing at the single-cell level.

Evgeny Yurkovsky1, Iftach Nachman.   

Abstract

The timing of a cellular event often hides critical information on the process leading to the event. Our ability to measure event times in single cells along with other quantities allow us to learn about the drivers of the timed process and its downstream effects. In this review, we cover different types of events that have been timed in single cells, methods to time such events and types of analysis that have been applied to event timings. We show how different timing distributions suggest different natures for the process. The statistical relations between the timing of different events may reveal how their respective processes are related biologically: Do they occur in sequence or in parallel? Are they independent or inter-dependent? Finally, quantifying morphological and molecular variables may help assess their contribution to the timing of an event and its related process.

Mesh:

Year:  2012        PMID: 23196852     DOI: 10.1093/bfgp/els057

Source DB:  PubMed          Journal:  Brief Funct Genomics        ISSN: 2041-2649            Impact factor:   4.241


  8 in total

1.  First-passage time approach to controlling noise in the timing of intracellular events.

Authors:  Khem Raj Ghusinga; John J Dennehy; Abhyudai Singh
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-09       Impact factor: 11.205

2.  Stochastic timing in gene expression for simple regulatory strategies.

Authors:  Alma Dal Co; Marco Cosentino Lagomarsino; Michele Caselle; Matteo Osella
Journal:  Nucleic Acids Res       Date:  2017-02-17       Impact factor: 16.971

Review 3.  Participation of microbiota in the development of gastric cancer.

Authors:  Li-Li Wang; Xin-Juan Yu; Shu-Hui Zhan; Sheng-Jiao Jia; Zi-Bin Tian; Quan-Jiang Dong
Journal:  World J Gastroenterol       Date:  2014-05-07       Impact factor: 5.742

4.  Temporal precision of regulated gene expression.

Authors:  Shivam Gupta; Julien Varennes; Hendrik C Korswagen; Andrew Mugler
Journal:  PLoS Comput Biol       Date:  2018-06-07       Impact factor: 4.475

5.  Optimum Threshold Minimizes Noise in Timing of Intracellular Events.

Authors:  Sherin Kannoly; Tianhui Gao; Supravat Dey; Ing-Nang Wang; Abhyudai Singh; John J Dennehy
Journal:  iScience       Date:  2020-05-21

Review 6.  Exploiting Information and Control Theory for Directing Gene Expression in Cell Populations.

Authors:  Lucas Henrion; Mathéo Delvenne; Fatemeh Bajoul Kakahi; Fabian Moreno-Avitia; Frank Delvigne
Journal:  Front Microbiol       Date:  2022-04-25       Impact factor: 5.640

7.  Temporal development of Drosophila embryos is highly robust across a wide temperature range.

Authors:  Jeronica Chong; Christopher Amourda; Timothy E Saunders
Journal:  J R Soc Interface       Date:  2018-07       Impact factor: 4.118

8.  Controlling gene expression timing through gene regulatory architecture.

Authors:  Md Zulfikar Ali; Robert C Brewster
Journal:  PLoS Comput Biol       Date:  2022-01-18       Impact factor: 4.475

  8 in total

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