Literature DB >> 23195123

Text-mining and neuroscience.

Kyle H Ambert1, Aaron M Cohen.   

Abstract

The wealth and diversity of neuroscience research are inherent characteristics of the discipline that can give rise to some complications. As the field continues to expand, we generate a great deal of data about all aspects, and from multiple perspectives, of the brain, its chemistry, biology, and how these affect behavior. The vast majority of research scientists cannot afford to spend their time combing the literature to find every article related to their research, nor do they wish to spend time adjusting their neuroanatomical vocabulary to communicate with other subdomains in the neurosciences. As such, there has been a recent increase in the amount of informatics research devoted to developing digital resources for neuroscience research. Neuroinformatics is concerned with the development of computational tools to further our understanding of the brain and to make sense of the vast amount of information that neuroscientists generate (French & Pavlidis, 2007). Many of these tools are related to the use of textual data. Here, we review some of the recent developments for better using the vast amount of textual information generated in neuroscience research and publication and suggest several use cases that will demonstrate how bench neuroscientists can take advantage of the resources that are available.
Copyright © 2012 Elsevier Inc. All rights reserved.

Mesh:

Year:  2012        PMID: 23195123     DOI: 10.1016/B978-0-12-388408-4.00006-X

Source DB:  PubMed          Journal:  Int Rev Neurobiol        ISSN: 0074-7742            Impact factor:   3.230


  7 in total

1.  Brain-wide analysis of electrophysiological diversity yields novel categorization of mammalian neuron types.

Authors:  Shreejoy J Tripathy; Shawn D Burton; Matthew Geramita; Richard C Gerkin; Nathaniel N Urban
Journal:  J Neurophysiol       Date:  2015-03-25       Impact factor: 2.714

2.  Automated Metadata Suggestion During Repository Submission.

Authors:  Robert A McDougal; Isha Dalal; Thomas M Morse; Gordon M Shepherd
Journal:  Neuroinformatics       Date:  2019-07

3.  Automatic target validation based on neuroscientific literature mining for tractography.

Authors:  Xavier Vasques; Renaud Richardet; Sean L Hill; David Slater; Jean-Cedric Chappelier; Etienne Pralong; Jocelyne Bloch; Bogdan Draganski; Laura Cif
Journal:  Front Neuroanat       Date:  2015-05-27       Impact factor: 3.856

4.  Virk: an active learning-based system for bootstrapping knowledge base development in the neurosciences.

Authors:  Kyle H Ambert; Aaron M Cohen; Gully A P C Burns; Eilis Boudreau; Kemal Sonmez
Journal:  Front Neuroinform       Date:  2013-12-25       Impact factor: 4.081

5.  Construction And Analysis Of The Time-Evolving Pain-Related Brain Network Using Literature Mining.

Authors:  Jihong Oh; Hyojin Bae; Chang-Eop Kim
Journal:  J Pain Res       Date:  2019-10-16       Impact factor: 3.133

6.  NeuroElectro: a window to the world's neuron electrophysiology data.

Authors:  Shreejoy J Tripathy; Judith Savitskaya; Shawn D Burton; Nathaniel N Urban; Richard C Gerkin
Journal:  Front Neuroinform       Date:  2014-04-29       Impact factor: 4.081

Review 7.  The mind-brain relationship as a mathematical problem.

Authors:  Giorgio A Ascoli
Journal:  ISRN Neurosci       Date:  2013-04-14
  7 in total

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