Literature DB >> 23195120

A survey of the neuroscience resource landscape: perspectives from the neuroscience information framework.

Jonathan Cachat1, Anita Bandrowski, Jeffery S Grethe, Amarnath Gupta, Vadim Astakhov, Fahim Imam, Stephen D Larson, Maryann E Martone.   

Abstract

The number of available neuroscience resources (databases, tools, materials, and networks) available via the Web continues to expand, particularly in light of newly implemented data sharing policies required by funding agencies and journals. However, the nature of dense, multifaceted neuroscience data and the design of classic search engine systems make efficient, reliable, and relevant discovery of such resources a significant challenge. This challenge is especially pertinent for online databases, whose dynamic content is largely opaque to contemporary search engines. The Neuroscience Information Framework was initiated to address this problem of finding and utilizing neuroscience-relevant resources. Since its first production release in 2008, NIF has been surveying the resource landscape for the neurosciences, identifying relevant resources and working to make them easily discoverable by the neuroscience community. In this chapter, we provide a survey of the resource landscape for neuroscience: what types of resources are available, how many there are, what they contain, and most importantly, ways in which these resources can be utilized by the research community to advance neuroscience research.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 23195120     DOI: 10.1016/B978-0-12-388408-4.00003-4

Source DB:  PubMed          Journal:  Int Rev Neurobiol        ISSN: 0074-7742            Impact factor:   3.230


  11 in total

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Authors:  Erna A van Niekerk; Mark H Tuszynski; Paul Lu; Jennifer N Dulin
Journal:  Mol Cell Proteomics       Date:  2015-12-22       Impact factor: 5.911

2.  Foundry: a message-oriented, horizontally scalable ETL system for scientific data integration and enhancement.

Authors:  Ibrahim Burak Ozyurt; Jeffrey S Grethe
Journal:  Database (Oxford)       Date:  2018-01-01       Impact factor: 3.451

3.  Bio-AnswerFinder: a system to find answers to questions from biomedical texts.

Authors:  Ibrahim Burak Ozyurt; Anita Bandrowski; Jeffrey S Grethe
Journal:  Database (Oxford)       Date:  2020-01-01       Impact factor: 3.451

4.  The NIDDK Information Network: A Community Portal for Finding Data, Materials, and Tools for Researchers Studying Diabetes, Digestive, and Kidney Diseases.

Authors:  Patricia L Whetzel; Jeffrey S Grethe; Davis E Banks; Maryann E Martone
Journal:  PLoS One       Date:  2015-09-22       Impact factor: 3.240

5.  Brain and Behavior: we want you to share your data.

Authors:  Maryann E Martone
Journal:  Brain Behav       Date:  2014-01       Impact factor: 2.708

6.  A knowledge based approach to matching human neurodegenerative disease and animal models.

Authors:  Sarah M Maynard; Christopher J Mungall; Suzanna E Lewis; Fahim T Imam; Maryann E Martone
Journal:  Front Neuroinform       Date:  2013-05-14       Impact factor: 4.081

7.  Mouse phenome database.

Authors:  Stephen C Grubb; Carol J Bult; Molly A Bogue
Journal:  Nucleic Acids Res       Date:  2013-11-15       Impact factor: 16.971

8.  Structure-centered portal for child psychiatry research.

Authors:  Pallavi Rane; Christian Haselgrove; Steven M Hodge; Jean A Frazier; David N Kennedy
Journal:  Front Neuroinform       Date:  2014-04-30       Impact factor: 4.081

9.  Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources.

Authors:  Luis N Marenco; Rixin Wang; Anita E Bandrowski; Jeffrey S Grethe; Gordon M Shepherd; Perry L Miller
Journal:  Front Neuroinform       Date:  2014-05-28       Impact factor: 4.081

10.  Resource Disambiguator for the Web: Extracting Biomedical Resources and Their Citations from the Scientific Literature.

Authors:  Ibrahim Burak Ozyurt; Jeffrey S Grethe; Maryann E Martone; Anita E Bandrowski
Journal:  PLoS One       Date:  2016-01-05       Impact factor: 3.240

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