Literature DB >> 23194264

Cross-linking/mass spectrometry as a new field and the proteomics information mountain of tomorrow.

Juri Rappsilber1.   

Abstract

The European Proteomics Association (EuPA) 2012 Scientific Congress 'New Horizons and Applications for Proteomics', hosted by the British Society for Proteome Research (BSPR) Glasgow, Scotland, UK, 12 July 2012 Cross-linking/mass spectrometry ended decades of method developments and entered the era of applications at this year's European Proteomics Association meeting. The train has started moving, with successful applications of this tool by multiple pioneering laboratories addressing biological and structural problems. Proteomics, on the other side, sees ever increasing data volumes, leading to questions as to how to store the data mountain publically, use it and convert it into testable hypotheses. The European Proteomics Association meeting has been complementary to the American Society for Mass Spectrometry meeting in many ways, also thanks to its more manageable size and the vision of the organizers in inviting some of Europe's best emerging minds.

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Year:  2012        PMID: 23194264      PMCID: PMC3926187          DOI: 10.1586/epr.12.44

Source DB:  PubMed          Journal:  Expert Rev Proteomics        ISSN: 1478-9450            Impact factor:   3.940


  16 in total

1.  Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach.

Authors:  Keren Lasker; Friedrich Förster; Stefan Bohn; Thomas Walzthoeni; Elizabeth Villa; Pia Unverdorben; Florian Beck; Ruedi Aebersold; Andrej Sali; Wolfgang Baumeister
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-23       Impact factor: 11.205

2.  Systematic discovery of in vivo phosphorylation networks.

Authors:  Rune Linding; Lars Juhl Jensen; Gerard J Ostheimer; Marcel A T M van Vugt; Claus Jørgensen; Ioana M Miron; Francesca Diella; Karen Colwill; Lorne Taylor; Kelly Elder; Pavel Metalnikov; Vivian Nguyen; Adrian Pasculescu; Jing Jin; Jin Gyoon Park; Leona D Samson; James R Woodgett; Robert B Russell; Peer Bork; Michael B Yaffe; Tony Pawson
Journal:  Cell       Date:  2007-06-14       Impact factor: 41.582

3.  Establishment of a protein frequency library and its application in the reliable identification of specific protein interaction partners.

Authors:  Séverine Boulon; Yasmeen Ahmad; Laura Trinkle-Mulcahy; Céline Verheggen; Andy Cobley; Peter Gregor; Edouard Bertrand; Mark Whitehorn; Angus I Lamond
Journal:  Mol Cell Proteomics       Date:  2009-12-20       Impact factor: 5.911

Review 4.  In vivo protein complex topologies: sights through a cross-linking lens.

Authors:  James E Bruce
Journal:  Proteomics       Date:  2012-05       Impact factor: 3.984

5.  Network medicine strikes a blow against breast cancer.

Authors:  Janine T Erler; Rune Linding
Journal:  Cell       Date:  2012-05-11       Impact factor: 41.582

6.  The protein composition of mitotic chromosomes determined using multiclassifier combinatorial proteomics.

Authors:  Shinya Ohta; Jimi-Carlo Bukowski-Wills; Luis Sanchez-Pulido; Flavia de Lima Alves; Laura Wood; Zhuo A Chen; Melpi Platani; Lutz Fischer; Damien F Hudson; Chris P Ponting; Tatsuo Fukagawa; William C Earnshaw; Juri Rappsilber
Journal:  Cell       Date:  2010-09-03       Impact factor: 41.582

7.  PRIDE Inspector: a tool to visualize and validate MS proteomics data.

Authors:  Rui Wang; Antonio Fabregat; Daniel Ríos; David Ovelleiro; Joseph M Foster; Richard G Côté; Johannes Griss; Attila Csordas; Yasset Perez-Riverol; Florian Reisinger; Henning Hermjakob; Lennart Martens; Juan Antonio Vizcaíno
Journal:  Nat Biotechnol       Date:  2012-02-08       Impact factor: 54.908

8.  Advancing cell biology through proteomics in space and time (PROSPECTS).

Authors:  Angus I Lamond; Mathias Uhlen; Stevan Horning; Alexander Makarov; Carol V Robinson; Luis Serrano; F Ulrich Hartl; Wolfgang Baumeister; Anne Katrin Werenskiold; Jens S Andersen; Ole Vorm; Michal Linial; Ruedi Aebersold; Matthias Mann
Journal:  Mol Cell Proteomics       Date:  2012-02-06       Impact factor: 5.911

9.  Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry.

Authors:  Zhuo Angel Chen; Anass Jawhari; Lutz Fischer; Claudia Buchen; Salman Tahir; Tomislav Kamenski; Morten Rasmussen; Laurent Lariviere; Jimi-Carlo Bukowski-Wills; Michael Nilges; Patrick Cramer; Juri Rappsilber
Journal:  EMBO J       Date:  2010-01-21       Impact factor: 11.598

10.  The beginning of a beautiful friendship: cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes.

Authors:  Juri Rappsilber
Journal:  J Struct Biol       Date:  2010-10-26       Impact factor: 2.867

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  5 in total

1.  Isotope-Coded Labeling for Accelerated Protein Interaction Profiling Using MS.

Authors:  John D Venable; Caitlin Steckler; Weijia Ou; Jan Grünewald; Sanjay Agarwalla; Ansgar Brock
Journal:  Anal Chem       Date:  2015-07-22       Impact factor: 6.986

Review 2.  Principles for Integrative Structural Biology Studies.

Authors:  Michael P Rout; Andrej Sali
Journal:  Cell       Date:  2019-05-30       Impact factor: 41.582

3.  Covalent labeling with isotopically encoded reagents for faster structural analysis of proteins by mass spectrometry.

Authors:  Yuping Zhou; Richard W Vachet
Journal:  Anal Chem       Date:  2013-09-23       Impact factor: 6.986

4.  Highly synergistic combinations of nanobodies that target SARS-CoV-2 and are resistant to escape.

Authors:  Fred D Mast; Peter C Fridy; Natalia E Ketaren; Junjie Wang; Erica Y Jacobs; Jean Paul Olivier; Tanmoy Sanyal; Kelly R Molloy; Fabian Schmidt; Magdalena Rutkowska; Yiska Weisblum; Lucille M Rich; Elizabeth R Vanderwall; Nicholas Dambrauskas; Vladimir Vigdorovich; Sarah Keegan; Jacob B Jiler; Milana E Stein; Paul Dominic B Olinares; Louis Herlands; Theodora Hatziioannou; D Noah Sather; Jason S Debley; David Fenyö; Andrej Sali; Paul D Bieniasz; John D Aitchison; Brian T Chait; Michael P Rout
Journal:  Elife       Date:  2021-12-07       Impact factor: 8.140

5.  Sequential Digestion with Trypsin and Elastase in Cross-Linking Mass Spectrometry.

Authors:  Therese Dau; Kapil Gupta; Imre Berger; Juri Rappsilber
Journal:  Anal Chem       Date:  2019-03-13       Impact factor: 6.986

  5 in total

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