Literature DB >> 23193139

Draft genome sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10.

Jessica Schneider1, Heiko Andrea, Jochen Blom, Sebastian Jaenicke, Christian Rückert, Christoph Schorsch, Rafael Szczepanowski, Mike Farwick, Alexander Goesmann, Alfred Pühler, Steffen Schaffer, Andreas Tauch, Tim Köhler, Karina Brinkrolf.   

Abstract

Wickerhamomyces ciferrii is a microorganism characterized by the production and secretion of large amounts of acetylated sphingoid bases, in particular tetraacetyl phytosphingosine. Here, we present the 15.90-Mbp draft genome sequence of W. ciferrii NRRL Y-1031 F-60-10 generated by pyrosequencing and de novo assembly. The draft genome sequence comprising 364 contigs in 150 scaffolds was annotated and covered 6,702 protein-coding sequences. This information will contribute to the metabolic engineering of this yeast to improve the yield and spectrum of acetylated sphingoid bases in biotechnological production.

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Year:  2012        PMID： 23193139      PMCID： PMC3536291          DOI： 10.1128/EC.00258-12

Source DB:  PubMed          Journal:  Eukaryot Cell        ISSN： 1535-9786


  16 in total

1.  Formation of Extracellular Sphingolipids by Microorganisms: IV. Pilot-Plant Production of Tetraacetylphytosphingosine by Hansenula ciferrii.

Authors:  H G Maister; S P Rogovin; F H Stodola; L J Wickerham
Journal:  Appl Microbiol       Date:  1962-09

2.  Metabolic engineering of the non-conventional yeast Pichia ciferrii for production of rare sphingoid bases.

Authors:  Daniel Börgel; Marco van den Berg; Thomas Hüller; Heiko Andrea; Gerhard Liebisch; Eckhard Boles; Christoph Schorsch; Ruud van der Pol; Anne Arink; Ilco Boogers; Rob van der Hoeven; Kees Korevaar; Mike Farwick; Tim Köhler; Steffen Schaffer
Journal:  Metab Eng       Date:  2012-03-18       Impact factor: 9.783

3.  Identification and characterization of a Saccharomyces cerevisiae gene, RSB1, involved in sphingoid long-chain base release.

Authors:  Akio Kihara; Yasuyuki Igarashi
Journal:  J Biol Chem       Date:  2002-05-28       Impact factor: 5.157

Review 4.  Epidermal sphingolipids: metabolism, function, and roles in skin disorders.

Authors:  Walter M Holleran; Yutaka Takagi; Yoshikazu Uchida
Journal:  FEBS Lett       Date:  2006-09-01       Impact factor: 4.124

5.  High-level production of tetraacetyl phytosphingosine (TAPS) by combined genetic engineering of sphingoid base biosynthesis and L-serine availability in the non-conventional yeast Pichia ciferrii.

Authors:  Christoph Schorsch; Tim Köhler; Heiko Andrea; Eckhard Boles
Journal:  Metab Eng       Date:  2011-12-10       Impact factor: 9.783

6.  Ceramide-dominant barrier repair lipids alleviate childhood atopic dermatitis: changes in barrier function provide a sensitive indicator of disease activity.

Authors:  Sarah L Chamlin; Jack Kao; Ilona J Frieden; Mary Y Sheu; Ashley J Fowler; Joachim W Fluhr; Mary L Williams; Peter M Elias
Journal:  J Am Acad Dermatol       Date:  2002-08       Impact factor: 11.527

7.  Genome evolution in yeasts.

Authors:  Bernard Dujon; David Sherman; Gilles Fischer; Pascal Durrens; Serge Casaregola; Ingrid Lafontaine; Jacky De Montigny; Christian Marck; Cécile Neuvéglise; Emmanuel Talla; Nicolas Goffard; Lionel Frangeul; Michel Aigle; Véronique Anthouard; Anna Babour; Valérie Barbe; Stéphanie Barnay; Sylvie Blanchin; Jean-Marie Beckerich; Emmanuelle Beyne; Claudine Bleykasten; Anita Boisramé; Jeanne Boyer; Laurence Cattolico; Fabrice Confanioleri; Antoine De Daruvar; Laurence Despons; Emmanuelle Fabre; Cécile Fairhead; Hélène Ferry-Dumazet; Alexis Groppi; Florence Hantraye; Christophe Hennequin; Nicolas Jauniaux; Philippe Joyet; Rym Kachouri; Alix Kerrest; Romain Koszul; Marc Lemaire; Isabelle Lesur; Laurence Ma; Héloïse Muller; Jean-Marc Nicaud; Macha Nikolski; Sophie Oztas; Odile Ozier-Kalogeropoulos; Stefan Pellenz; Serge Potier; Guy-Franck Richard; Marie-Laure Straub; Audrey Suleau; Dominique Swennen; Fredj Tekaia; Micheline Wésolowski-Louvel; Eric Westhof; Bénédicte Wirth; Maria Zeniou-Meyer; Ivan Zivanovic; Monique Bolotin-Fukuhara; Agnès Thierry; Christiane Bouchier; Bernard Caudron; Claude Scarpelli; Claude Gaillardin; Jean Weissenbach; Patrick Wincker; Jean-Luc Souciet
Journal:  Nature       Date:  2004-07-01       Impact factor: 49.962

8.  Anti-microbial and -inflammatory activity and efficacy of phytosphingosine: an in vitro and in vivo study addressing acne vulgaris.

Authors:  T Pavicic; U Wollenweber; M Farwick; H C Korting
Journal:  Int J Cosmet Sci       Date:  2007-06       Impact factor: 2.970

9.  Novel sphingolipid derivatives promote keratinocyte differentiation.

Authors:  György Paragh; Petra Schling; Peter Ugocsai; Alexander E Kel; Gerhard Liebisch; Susanne Heimerl; Christoph Moehle; Yvonne Schiemann; Michael Wegmann; Mike Farwick; Norbert M Wikonkál; József Mandl; Thomas Langmann; Gerd Schmitz
Journal:  Exp Dermatol       Date:  2008-12       Impact factor: 3.960

10.  Knockout of the DNA ligase IV homolog gene in the sphingoid base producing yeast Pichia ciferrii significantly increases gene targeting efficiency.

Authors:  Christoph Schorsch; Tim Köhler; Eckhard Boles
Journal:  Curr Genet       Date:  2009-05-26       Impact factor: 3.886
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  6 in total

Review 1.  Genomics and the making of yeast biodiversity.

Authors:  Chris Todd Hittinger; Antonis Rokas; Feng-Yan Bai; Teun Boekhout; Paula Gonçalves; Thomas W Jeffries; Jacek Kominek; Marc-André Lachance; Diego Libkind; Carlos A Rosa; José Paulo Sampaio; Cletus P Kurtzman
Journal:  Curr Opin Genet Dev       Date:  2015-11-30       Impact factor: 5.578

2.  Clade- and species-specific features of genome evolution in the Saccharomycetaceae.

Authors:  Kenneth H Wolfe; David Armisén; Estelle Proux-Wera; Seán S ÓhÉigeartaigh; Haleema Azam; Jonathan L Gordon; Kevin P Byrne
Journal:  FEMS Yeast Res       Date:  2015-06-10       Impact factor: 2.796

Review 3.  Expanding the Knowledge on the Skillful Yeast Cyberlindnera jadinii.

Authors:  Maria Sousa-Silva; Daniel Vieira; Pedro Soares; Margarida Casal; Isabel Soares-Silva
Journal:  J Fungi (Basel)       Date:  2021-01-09

4.  Differences in the Fatty Acid Profile, Morphology, and Tetraacetylphytosphingosine-Forming Capability Between Wild-Type and Mutant Wickerhamomyces ciferrii.

Authors:  Jun Young Choi; Hee Jin Hwang; Woo Yeon Cho; Jong-Il Choi; Pyung Cheon Lee
Journal:  Front Bioeng Biotechnol       Date:  2021-06-09

5.  Genome Sequence of the Yeast Cyberlindnera fabianii (Hansenula fabianii).

Authors:  Kelle C Freel; Véronique Sarilar; Cécile Neuvéglise; Hugo Devillers; Anne Friedrich; Joseph Schacherer
Journal:  Genome Announc       Date:  2014-08-07

6.  Redundans: an assembly pipeline for highly heterozygous genomes.

Authors:  Leszek P Pryszcz; Toni Gabaldón
Journal:  Nucleic Acids Res       Date:  2016-04-29       Impact factor: 16.971
  6 in total

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