Literature DB >> 23192768

Metabolic characteristics of the species Variovorax paradoxus.

Barbara Satola1, Jan Hendrik Wübbeler, Alexander Steinbüchel.   

Abstract

This review outlines information about the Gram-negative, aerobic bacterium Variovorax paradoxus. The genomes of these species have G+C contents of 66.5-69.4 mol%, and the cells form yellow colonies. Some strains of V. paradoxus are facultative lithoautotrophic, others are chemoorganotrophic. Many of them are associated with important catabolic processes including the degradation of toxic and/or complex chemical compounds. The degradation pathways or other skills related to the following compounds, respectively, are described in this review: sulfolane, 3-sulfolene, 2-mercaptosuccinic acid, 3,3'-thiodipropionic acid, aromatic sulfonates, alkanesulfonates, amino acids and other sulfur sources, polychlorinated biphenyls, dimethyl terephthalate, linuron, 2,4-dinitrotoluene, homovanillate, veratraldehyde, 2,4-dichlorophenoxyacetic acid, anthracene, poly(3-hydroxybutyrate), chitin, cellulose, humic acids, metal-EDTA complexes, yttrium, rare earth elements, As(III), trichloroethylene, capsaicin, 3-nitrotyrosine, acyl-homoserine lactones, 1-aminocyclopropane-1-carboxylate, methyl tert-butyl ether, geosmin, and 2-methylisoborneol. Strains of V. paradoxus are also engaged in mutually beneficial interactions with other plant and bacterial species in various ecosystems. This species comprises probably promising strains for bioremediation and other biotechnical applications. Lately, the complete genomes of strains S110 and EPS have been sequenced for further investigations.

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Year:  2012        PMID: 23192768     DOI: 10.1007/s00253-012-4585-z

Source DB:  PubMed          Journal:  Appl Microbiol Biotechnol        ISSN: 0175-7598            Impact factor:   4.813


  31 in total

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Authors:  Shi-Lei Sun; Wen-Long Yang; Wen-Wan Fang; Yun-Xiu Zhao; Ling Guo; Yi-Jun Dai
Journal:  Appl Environ Microbiol       Date:  2018-08-01       Impact factor: 4.792

2.  The novel bacterial N-demethylase PdmAB is responsible for the initial step of N,N-dimethyl-substituted phenylurea herbicide degradation.

Authors:  Tao Gu; Chaoyang Zhou; Sebastian R Sørensen; Ji Zhang; Jian He; Peiwen Yu; Xin Yan; Shunpeng Li
Journal:  Appl Environ Microbiol       Date:  2013-10-11       Impact factor: 4.792

3.  Proposal of three novel species of soil bacteria, Variovorax ureilyticus, Variovorax rhizosphaerae, and Variovorax robiniae, in the family Comamonadaceae.

Authors:  Tuan Manh Nguyen; Ngoc Hoang Trinh; Jaisoo Kim
Journal:  J Microbiol       Date:  2018-06-14       Impact factor: 3.422

4.  Snapshots during the catalytic cycle of a histidine acid phytase reveal an induced fit structural mechanism.

Authors:  Isabella M Acquistapace; Monika A Ziętek; Arthur W H Li; Melissa Salmon; Imke Kühn; Mike R Bedford; Charles A Brearley; Andrew M Hemmings
Journal:  J Biol Chem       Date:  2020-10-14       Impact factor: 5.157

5.  Biodegradation of a commercial mixture of the herbicides atrazine and S-metolachlor in a multi-channel packed biofilm reactor.

Authors:  Alberto Cabrera-Orozco; Silvia Patricia Galíndez-Nájera; Nora Ruiz-Ordaz; Juvencio Galíndez-Mayer; Fernando Martínez-Jerónimo
Journal:  Environ Sci Pollut Res Int       Date:  2016-02-20       Impact factor: 4.223

6.  Ambient nitrogen reduction cycle using a hybrid inorganic-biological system.

Authors:  Chong Liu; Kelsey K Sakimoto; Brendan C Colón; Pamela A Silver; Daniel G Nocera
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-06       Impact factor: 11.205

7.  Methanol utilizers of the rhizosphere and phyllosphere of a common grass and forb host species.

Authors:  Saranya Kanukollu; Rainer Remus; Alexander Martin Rücker; Caroline Buchen-Tschiskale; Mathias Hoffmann; Steffen Kolb
Journal:  Environ Microbiome       Date:  2022-07-06

8.  Mercaptosuccinate dioxygenase, a cysteine dioxygenase homologue, from Variovorax paradoxus strain B4 is the key enzyme of mercaptosuccinate degradation.

Authors:  Ulrike Brandt; Marc Schürmann; Alexander Steinbüchel
Journal:  J Biol Chem       Date:  2014-09-16       Impact factor: 5.157

9.  Hi-C deconvolution of a textile dye-related microbiome reveals novel taxonomic landscapes and links phenotypic potential to individual genomes.

Authors:  Ayixon Sánchez-Reyes; Luz Bretón-Deval; Hayley Mangelson; Ilse Salinas-Peralta; Alejandro Sanchez-Flores
Journal:  Int Microbiol       Date:  2021-07-16       Impact factor: 2.479

10.  Plant ecological genomics at the limits of life in the Atacama Desert.

Authors:  Gil Eshel; Viviana Araus; Soledad Undurraga; Daniela C Soto; Carol Moraga; Alejandro Montecinos; Tomás Moyano; Jonathan Maldonado; Francisca P Díaz; Kranthi Varala; Chase W Nelson; Orlando Contreras-López; Henrietta Pal-Gabor; Tatiana Kraiser; Gabriela Carrasco-Puga; Ricardo Nilo-Poyanco; Charles M Zegar; Ariel Orellana; Martín Montecino; Alejandro Maass; Miguel L Allende; Robert DeSalle; Dennis W Stevenson; Mauricio González; Claudio Latorre; Gloria M Coruzzi; Rodrigo A Gutiérrez
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-16       Impact factor: 11.205

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