Literature DB >> 23192041

Crystallization of the DdrB-DNA complex from Deinococcus radiodurans.

Seiji Sugiman-Marangos1, Murray Junop.   

Abstract

The remarkable ability of members of the Deinococcus family to recover from extreme DNA damage is in part owing to their robust DNA-repair mechanisms. Of particular interest is their ability to repair hundreds of double-strand DNA breakages through a rapid and efficient mechanism involving novel proteins that are uniquely found in Deinococcus spp. One such protein, DdrB, which is thought to play a role early in DSB repair, has been crystallized in complex with ssDNA and data have been collected to 2.3 Å resolution.

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Year:  2012        PMID: 23192041      PMCID: PMC3509982          DOI: 10.1107/S1744309112044041

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  12 in total

1.  DdrB stimulates single-stranded DNA annealing and facilitates RecA-independent DNA repair in Deinococcus radiodurans.

Authors:  Guangzhi Xu; Huiming Lu; Liangyan Wang; Huan Chen; Zhenjian Xu; Yihuai Hu; Bing Tian; Yuejin Hua
Journal:  DNA Repair (Amst)       Date:  2010-05-06

2.  Reassembly of shattered chromosomes in Deinococcus radiodurans.

Authors:  Ksenija Zahradka; Dea Slade; Adriana Bailone; Suzanne Sommer; Dietrich Averbeck; Mirjana Petranovic; Ariel B Lindner; Miroslav Radman
Journal:  Nature       Date:  2006-09-27       Impact factor: 49.962

3.  Structure of a sliding clamp on DNA.

Authors:  Roxana E Georgescu; Seung-Sup Kim; Olga Yurieva; John Kuriyan; Xiang-Peng Kong; Mike O'Donnell
Journal:  Cell       Date:  2008-01-11       Impact factor: 41.582

4.  Single-stranded DNA-binding protein complex from Helicobacter pylori suggests an ssDNA-binding surface.

Authors:  Kun-Wei Chan; Yi-Juan Lee; Chia-Hung Wang; Haimei Huang; Yuh-Ju Sun
Journal:  J Mol Biol       Date:  2009-03-13       Impact factor: 5.469

5.  Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures.

Authors:  Zhucheng Chen; Haijuan Yang; Nikola P Pavletich
Journal:  Nature       Date:  2008-05-22       Impact factor: 49.962

6.  The deinococcal DdrB protein is involved in an early step of DNA double strand break repair and in plasmid transformation through its single-strand annealing activity.

Authors:  Claire Bouthier de la Tour; Stéphanie Boisnard; Cédric Norais; Magali Toueille; Esma Bentchikou; Françoise Vannier; Michael M Cox; Suzanne Sommer; Pascale Servant
Journal:  DNA Repair (Amst)       Date:  2011-10-02

7.  DdrB protein, an alternative Deinococcus radiodurans SSB induced by ionizing radiation.

Authors:  Cédric A Norais; Sindhu Chitteni-Pattu; Elizabeth A Wood; Ross B Inman; Michael M Cox
Journal:  J Biol Chem       Date:  2009-06-10       Impact factor: 5.157

8.  The structure of DdrB from Deinococcus: a new fold for single-stranded DNA binding proteins.

Authors:  Seiji Sugiman-Marangos; Murray S Junop
Journal:  Nucleic Acids Res       Date:  2010-02-02       Impact factor: 16.971

9.  PHENIX: a comprehensive Python-based system for macromolecular structure solution.

Authors:  Paul D Adams; Pavel V Afonine; Gábor Bunkóczi; Vincent B Chen; Ian W Davis; Nathaniel Echols; Jeffrey J Headd; Li-Wei Hung; Gary J Kapral; Ralf W Grosse-Kunstleve; Airlie J McCoy; Nigel W Moriarty; Robert Oeffner; Randy J Read; David C Richardson; Jane S Richardson; Thomas C Terwilliger; Peter H Zwart
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

10.  Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance.

Authors:  Masashi Tanaka; Ashlee M Earl; Heather A Howell; Mie-Jung Park; Jonathan A Eisen; Scott N Peterson; John R Battista
Journal:  Genetics       Date:  2004-09       Impact factor: 4.562

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  2 in total

1.  The essential role of the Deinococcus radiodurans ssb gene in cell survival and radiation tolerance.

Authors:  J Scott Lockhart; Linda C DeVeaux
Journal:  PLoS One       Date:  2013-08-09       Impact factor: 3.240

2.  Crystal structure of the DdrB/ssDNA complex from Deinococcus radiodurans reveals a DNA binding surface involving higher-order oligomeric states.

Authors:  Seiji N Sugiman-Marangos; John K Peel; Yoni M Weiss; Rodolfo Ghirlando; Murray S Junop
Journal:  Nucleic Acids Res       Date:  2013-08-23       Impact factor: 16.971

  2 in total

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