Literature DB >> 23184677

Biological network analysis: insights into structure and functions.

Xiaoke Ma1, Lin Gao.   

Abstract

In the past two decades, great efforts have been devoted to extract the dependence and interplay between structure and functions in biological networks because they have strong relevance to biological processes. In this article, we reviewed the recent development in the biological network analysis. In detail, we first reviewed the interactome topological properties of biological networks, the methods for structure and functional patterns.

Mesh:

Year:  2012        PMID: 23184677     DOI: 10.1093/bfgp/els045

Source DB:  PubMed          Journal:  Brief Funct Genomics        ISSN: 2041-2649            Impact factor:   4.241


  12 in total

Review 1.  Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review.

Authors:  Peter Csermely; Tamás Korcsmáros; Huba J M Kiss; Gábor London; Ruth Nussinov
Journal:  Pharmacol Ther       Date:  2013-02-04       Impact factor: 12.310

2.  Plants are intelligent, here's how.

Authors:  Paco Calvo; Monica Gagliano; Gustavo M Souza; Anthony Trewavas
Journal:  Ann Bot       Date:  2020-01-08       Impact factor: 4.357

3.  Research prioritization through prediction of future impact on biomedical science: a position paper on inference-analytics.

Authors:  Madhavi K Ganapathiraju; Naoki Orii
Journal:  Gigascience       Date:  2013-08-30       Impact factor: 6.524

4.  Correlation-Based Network Generation, Visualization, and Analysis as a Powerful Tool in Biological Studies: A Case Study in Cancer Cell Metabolism.

Authors:  Albert Batushansky; David Toubiana; Aaron Fait
Journal:  Biomed Res Int       Date:  2016-10-19       Impact factor: 3.411

5.  SyNDI: synchronous network data integration framework.

Authors:  Erno Lindfors; Jesse C J van Dam; Carolyn Ming Chi Lam; Niels A Zondervan; Vitor A P Martins Dos Santos; Maria Suarez-Diez
Journal:  BMC Bioinformatics       Date:  2018-11-06       Impact factor: 3.169

6.  Mining large-scale response networks reveals 'topmost activities' in Mycobacterium tuberculosis infection.

Authors:  Awanti Sambarey; Karyala Prashanthi; Nagasuma Chandra
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

7.  Evolution of Centrality Measurements for the Detection of Essential Proteins in Biological Networks.

Authors:  Mahdi Jalili; Ali Salehzadeh-Yazdi; Shailendra Gupta; Olaf Wolkenhauer; Marjan Yaghmaie; Osbaldo Resendis-Antonio; Kamran Alimoghaddam
Journal:  Front Physiol       Date:  2016-08-26       Impact factor: 4.566

8.  Building Graphs To Describe Dynamics, Kinetics, and Energetics in the d-ALa:d-Lac Ligase VanA.

Authors:  Nathalie Duclert-Savatier; Guillaume Bouvier; Michael Nilges; Thérèse E Malliavin
Journal:  J Chem Inf Model       Date:  2016-09-12       Impact factor: 4.956

Review 9.  An Understudied Dimension: Why Age Needs to Be Considered When Studying Epigenetic-Environment Interactions.

Authors:  Rio Barrere-Cain; Patrick Allard
Journal:  Epigenet Insights       Date:  2020-08-05

10.  Identifying Protein-metabolite Networks Associated with COPD Phenotypes.

Authors:  Emily Mastej; Lucas Gillenwater; Yonghua Zhuang; Katherine A Pratte; Russell P Bowler; Katerina Kechris
Journal:  Metabolites       Date:  2020-03-25
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