Literature DB >> 23181765

On improving the communication between models and data.

Michael C Dietze1, David S Lebauer, Rob Kooper.   

Abstract

The potential for model-data synthesis is growing in importance as we enter an era of 'big data', greater connectivity and faster computation. Realizing this potential requires that the research community broaden its perspective about how and why they interact with models. Models can be viewed as scaffolds that allow data at different scales to inform each other through our understanding of underlying processes. Perceptions of relevance, accessibility and informatics are presented as the primary barriers to broader adoption of models by the community, while an inability to fully utilize the breadth of expertise and data from the community is a primary barrier to model improvement. Overall, we promote a community-based paradigm to model-data synthesis and highlight some of the tools and techniques that facilitate this approach. Scientific workflows address critical informatics issues in transparency, repeatability and automation, while intuitive, flexible web-based interfaces make running and visualizing models more accessible. Bayesian statistics provides powerful tools for assimilating a diversity of data types and for the analysis of uncertainty. Uncertainty analyses enable new measurements to target those processes most limiting our predictive ability. Moving forward, tools for information management and data assimilation need to be improved and made more accessible.
© 2013 John Wiley & Sons Ltd.

Keywords:  Bayesian statistics; PEcAn; accessibility; data assimilation; informatics; provenance; uncertainty; workflow

Mesh:

Year:  2013        PMID: 23181765     DOI: 10.1111/pce.12043

Source DB:  PubMed          Journal:  Plant Cell Environ        ISSN: 0140-7791            Impact factor:   7.228


  12 in total

Review 1.  Gaps in knowledge and data driving uncertainty in models of photosynthesis.

Authors:  Michael C Dietze
Journal:  Photosynth Res       Date:  2013-05-05       Impact factor: 3.573

2.  The Calibration and Use of Capacitance Sensors to Monitor Stem Water Content in Trees.

Authors:  Ashley M Matheny; Steven R Garrity; Gil Bohrer
Journal:  J Vis Exp       Date:  2017-12-27       Impact factor: 1.355

3.  Climate Drives Modeled Forest Carbon Cycling Resistance and Resilience in the Upper Great Lakes Region, USA.

Authors:  Kalyn Dorheim; Christopher M Gough; Lisa T Haber; Kayla C Mathes; Alexey N Shiklomanov; Ben Bond-Lamberty
Journal:  J Geophys Res Biogeosci       Date:  2022-01-13       Impact factor: 4.432

4.  The Terrestrial Biosphere Model Farm.

Authors:  Joshua B Fisher; Munish Sikka; Gary L Block; Christopher R Schwalm; Nicholas C Parazoo; Hannah R Kolus; Malen Sok; Audrey Wang; Anna Gagne-Landmann; Shakirudeen Lawal; Alexandre Guillaume; Alyssa Poletti; Kevin M Schaefer; Bassil El Masri; Peter E Levy; Yaxing Wei; Michael C Dietze; Deborah N Huntzinger
Journal:  J Adv Model Earth Syst       Date:  2022-02-16       Impact factor: 8.469

Review 5.  Mathematical models light up plant signaling.

Authors:  Yin Hoon Chew; Robert W Smith; Harriet J Jones; Daniel D Seaton; Ramon Grima; Karen J Halliday
Journal:  Plant Cell       Date:  2014-01-30       Impact factor: 11.277

6.  Short-term favorable weather conditions are an important control of interannual variability in carbon and water fluxes.

Authors:  Jakob Zscheischler; Simone Fatichi; Sebastian Wolf; Peter D Blanken; Gil Bohrer; Kenneth Clark; Ankur R Desai; David Hollinger; Trevor Keenan; Kimberly A Novick; Sonia I Seneviratne
Journal:  J Geophys Res Biogeosci       Date:  2016-08-25       Impact factor: 3.822

Review 7.  Trait-based representation of hydrological functional properties of plants in weather and ecosystem models.

Authors:  Ashley M Matheny; Golnazalsadat Mirfenderesgi; Gil Bohrer
Journal:  Plant Divers       Date:  2016-11-24

8.  The forests of the midwestern United States at Euro-American settlement: Spatial and physical structure based on contemporaneous survey data.

Authors:  Christopher J Paciorek; Charles V Cogbill; Jody A Peters; John W Williams; David J Mladenoff; Andria Dawson; Jason S McLachlan
Journal:  PLoS One       Date:  2021-02-11       Impact factor: 3.240

9.  Beyond ecosystem modeling: A roadmap to community cyberinfrastructure for ecological data-model integration.

Authors:  Istem Fer; Anthony K Gardella; Alexey N Shiklomanov; Eleanor E Campbell; Elizabeth M Cowdery; Martin G De Kauwe; Ankur Desai; Matthew J Duveneck; Joshua B Fisher; Katherine D Haynes; Forrest M Hoffman; Miriam R Johnston; Rob Kooper; David S LeBauer; Joshua Mantooth; William J Parton; Benjamin Poulter; Tristan Quaife; Ann Raiho; Kevin Schaefer; Shawn P Serbin; James Simkins; Kevin R Wilcox; Toni Viskari; Michael C Dietze
Journal:  Glob Chang Biol       Date:  2020-11-06       Impact factor: 10.863

Review 10.  Forest response and recovery following disturbance in upland forests of the Atlantic Coastal Plain.

Authors:  Karina V R Schäfer; Heidi J Renninger; Nicholas J Carlo; Dirk W Vanderklein
Journal:  Front Plant Sci       Date:  2014-06-26       Impact factor: 5.753

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