Literature DB >> 23179769

Entropy versus aromaticity in the conformational dynamics of aromatic rings.

Oleg V Shishkin1, Przemyslaw Dopieralski, Irina V Omelchenko, Leonid Gorb, Zdzislaw Latajka, Jerzy Leszczynski.   

Abstract

Comparison of the results of Car-Parrinello molecular dynamics simulations of isolated benzene, pyrimidine and 1,2,4-triazine molecules reveals that the unusually low population of planar geometry of the benzene ring is caused by entropy effects despite its high aromaticity. The decrease in symmetry of the molecule results in smaller changes in entropy and Gibbs free energy due to out-of-plane deformations of the ring, leading to an increase in the population of planar geometry of the ring. This leads to differences in the topology of potential energy and Gibbs free energy surfaces.

Entities:  

Year:  2012        PMID: 23179769     DOI: 10.1007/s00894-012-1670-2

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  11 in total

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Journal:  Phys Rev Lett       Date:  1996-10-28       Impact factor: 9.161

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Authors:  T M Krygowski; M K Cyrański
Journal:  Chem Rev       Date:  2001-05       Impact factor: 60.622

3.  New insight on structural properties of hydrated nucleic acid bases from ab initio molecular dynamics.

Authors:  Al'ona Furmanchuk; Oleg V Shishkin; Olexandr Isayev; Leonid Gorb; Jerzy Leszczynski
Journal:  Phys Chem Chem Phys       Date:  2010-06-08       Impact factor: 3.676

4.  Unified approach for molecular dynamics and density-functional theory.

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Journal:  Phys Rev Lett       Date:  1985-11-25       Impact factor: 9.161

5.  Symmetry forbidden vibronic spectra and internal conversion in benzene.

Authors:  Jun Li; Chih-Kai Lin; Xiang Yuan Li; Chao Yuan Zhu; Sheng Hsien Lin
Journal:  Phys Chem Chem Phys       Date:  2010-10-14       Impact factor: 3.676

6.  Are isolated nucleic acid bases really planar? A Car-Parrinello molecular dynamics study.

Authors:  Olexandr Isayev; Al'ona Furmanchuk; Oleg V Shishkin; Leond Gorb; Jerzy Leszczynski
Journal:  J Phys Chem B       Date:  2007-03-10       Impact factor: 2.991

7.  Which NICS aromaticity index for planar pi rings is best?

Authors:  Hossein Fallah-Bagher-Shaidaei; Chaitanya S Wannere; Clémence Corminboeuf; Ralph Puchta; Paul v R Schleyer
Journal:  Org Lett       Date:  2006-03-02       Impact factor: 6.005

8.  Efficient pseudopotentials for plane-wave calculations.

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Journal:  Phys Rev B Condens Matter       Date:  1991-01-15

9.  Aromaticity in heterocyclic analogues of benzene: comprehensive analysis of structural aspects, electron delocalization and magnetic characteristics.

Authors:  Irina V Omelchenko; Oleg V Shishkin; Leonid Gorb; Jerzy Leszczynski; Stijn Fias; Patrick Bultinck
Journal:  Phys Chem Chem Phys       Date:  2011-07-04       Impact factor: 3.676

10.  Nucleus-Independent Chemical Shifts:  A Simple and Efficient Aromaticity Probe.

Authors:  Paul von Ragué Schleyer; Christoph Maerker; Alk Dransfeld; Haijun Jiao; Nicolaas J R van Eikema Hommes
Journal:  J Am Chem Soc       Date:  1996-07-03       Impact factor: 15.419

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  1 in total

1.  Impact of Deuteration and Temperature on Furan Ring Dynamics.

Authors:  Przemyslaw Dopieralski; Iryna V Omelchenko; Zdzislaw Latajka
Journal:  Molecules       Date:  2021-05-13       Impact factor: 4.411

  1 in total

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