| Literature DB >> 23179769 |
Oleg V Shishkin1, Przemyslaw Dopieralski, Irina V Omelchenko, Leonid Gorb, Zdzislaw Latajka, Jerzy Leszczynski.
Abstract
Comparison of the results of Car-Parrinello molecular dynamics simulations of isolated benzene, pyrimidine and 1,2,4-triazine molecules reveals that the unusually low population of planar geometry of the benzene ring is caused by entropy effects despite its high aromaticity. The decrease in symmetry of the molecule results in smaller changes in entropy and Gibbs free energy due to out-of-plane deformations of the ring, leading to an increase in the population of planar geometry of the ring. This leads to differences in the topology of potential energy and Gibbs free energy surfaces.Entities:
Year: 2012 PMID: 23179769 DOI: 10.1007/s00894-012-1670-2
Source DB: PubMed Journal: J Mol Model ISSN: 0948-5023 Impact factor: 1.810