Literature DB >> 23179132

Reaction networks and evolutionary game theory.

Tomas Veloz1, Pablo Razeto-Barry, Peter Dittrich, Alejandro Fajardo.   

Abstract

The powerful mathematical tools developed for the study of large scale reaction networks have given rise to applications of this framework beyond the scope of biochemistry. Recently, reaction networks have been suggested as an alternative way to model social phenomena. In this "socio-chemical metaphor" molecular species play the role of agents' decisions and their outcomes, and chemical reactions play the role of interactions among these decisions. From here, it is possible to study the dynamical properties of social systems using standard tools of biochemical modelling. In this work we show how to use reaction networks to model systems that are usually studied via evolutionary game theory. We first illustrate our framework by modeling the repeated prisoners' dilemma. The model is built from the payoff matrix together with assumptions of the agents' memory and recognizability capacities. The model provides consistent results concerning the performance of the agents, and allows for the examination of the steady states of the system in a simple manner. We further develop a model considering the interaction among Tit for Tat and Defector agents. We produce analytical results concerning the performance of the strategies in different situations of agents' memory and recognizability. This approach unites two important theories and may produce new insights in classical problems such as the evolution of cooperation in large scale systems.

Mesh:

Year:  2012        PMID: 23179132     DOI: 10.1007/s00285-012-0626-6

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  18 in total

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Authors:  Wolfgang Wiechert
Journal:  J Biotechnol       Date:  2002-03-14       Impact factor: 3.307

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Authors:  Thomas Pfeiffer; Claudia Rutte; Timothy Killingback; Michael Taborsky; Sebastian Bonhoeffer
Journal:  Proc Biol Sci       Date:  2005-06-07       Impact factor: 5.349

Review 4.  Five rules for the evolution of cooperation.

Authors:  Martin A Nowak
Journal:  Science       Date:  2006-12-08       Impact factor: 47.728

Review 5.  Autopoiesis 40 years later. A review and a reformulation.

Authors:  Pablo Razeto-Barry
Journal:  Orig Life Evol Biosph       Date:  2012-10-04       Impact factor: 1.950

6.  Autopoiesis: the organization of living systems, its characterization and a model.

Authors:  F G Varela; H R Maturana; R Uribe
Journal:  Curr Mod Biol       Date:  1974-05

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Authors:  R Heinrich; T A Rapoport
Journal:  Eur J Biochem       Date:  1974-02-15

8.  A strategy of win-stay, lose-shift that outperforms tit-for-tat in the Prisoner's Dilemma game.

Authors:  M Nowak; K Sigmund
Journal:  Nature       Date:  1993-07-01       Impact factor: 49.962

9.  The genetical evolution of social behaviour. I.

Authors:  W D Hamilton
Journal:  J Theor Biol       Date:  1964-07       Impact factor: 2.691

Review 10.  Fifteen years of large scale metabolic modeling of yeast: developments and impacts.

Authors:  Tobias Osterlund; Intawat Nookaew; Jens Nielsen
Journal:  Biotechnol Adv       Date:  2011-08-06       Impact factor: 14.227

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  1 in total

1.  Effects of small particle numbers on long-term behaviour in discrete biochemical systems.

Authors:  Peter Kreyssig; Christian Wozar; Stephan Peter; Tomás Veloz; Bashar Ibrahim; Peter Dittrich
Journal:  Bioinformatics       Date:  2014-09-01       Impact factor: 6.937

  1 in total

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