Literature DB >> 23175592

Generating Functions for Multi-labeled Trees.

E Czabarka1, P L Erdős, V Johnson, V Moulton.   

Abstract

Multi-labeled trees are a generalization of phylogenetic trees that are used, for example, in the study of gene versus species evolution and as the basis for phylogenetic network construction. Unlike phylogenetic trees, in a leaf-multi-labeled tree it is possible to label more than one leaf by the same element of the underlying label set. In this paper we derive formulae for generating functions of leaf-multi-labeled trees and use these to derive recursions for counting such trees. In particular, we prove results which generalize previous theorems by Harding on so-called tree-shapes, and by Otter on relating the number of rooted and unrooted phylogenetic trees.

Entities:  

Year:  2012        PMID: 23175592      PMCID: PMC3500966          DOI: 10.1016/j.dam.2012.08.010

Source DB:  PubMed          Journal:  Discrete Appl Math        ISSN: 0166-218X            Impact factor:   1.139


  7 in total

1.  Computing a smallest multilabeled phylogenetic tree from rooted triplets.

Authors:  Sylvain Guillemot; Jesper Jansson; Wing-Kin Sung
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2011 Jul-Aug       Impact factor: 3.710

2.  Reconstructing the evolutionary history of polyploids from multilabeled trees.

Authors:  Katharina T Huber; Bengt Oxelman; Martin Lott; Vincent Moulton
Journal:  Mol Biol Evol       Date:  2006-06-23       Impact factor: 16.240

3.  Pattern identification in biogeography.

Authors:  Ganeshkumar Ganapathy; Barbara Goodson; Robert Jansen; Hai-Son Le; Vijaya Ramachandran; Tandy Warnow
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2006 Oct-Dec       Impact factor: 3.710

4.  The complexity of deriving multi-labeled trees from bipartitions.

Authors:  Katharina T Huber; Martin Lott; Vincent Moulton; Andreas Spillner
Journal:  J Comput Biol       Date:  2008 Jul-Aug       Impact factor: 1.479

5.  Phylogenetic analysis. Models and estimation procedures.

Authors:  L L Cavalli-Sforza; A W Edwards
Journal:  Am J Hum Genet       Date:  1967-05       Impact factor: 11.025

6.  Phylogenetic networks from multi-labelled trees.

Authors:  K T Huber; V Moulton
Journal:  J Math Biol       Date:  2006-02-07       Impact factor: 2.164

7.  Inferring polyploid phylogenies from multiply-labeled gene trees.

Authors:  Martin Lott; Andreas Spillner; Katharina T Huber; Anna Petri; Bengt Oxelman; Vincent Moulton
Journal:  BMC Evol Biol       Date:  2009-08-28       Impact factor: 3.260

  7 in total
  2 in total

1.  Reconciling event-labeled gene trees with MUL-trees and species networks.

Authors:  Marc Hellmuth; Katharina T Huber; Vincent Moulton
Journal:  J Math Biol       Date:  2019-08-13       Impact factor: 2.259

2.  Enumerating all maximal frequent subtrees in collections of phylogenetic trees.

Authors:  Akshay Deepak; David Fernández-Baca
Journal:  Algorithms Mol Biol       Date:  2014-06-18       Impact factor: 1.405

  2 in total

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