Literature DB >> 23175259

Rapid whole-genome sequencing for investigation of a suspected tuberculosis outbreak.

M Estée Török1, Sandra Reuter, Josephine Bryant, Claudio U Köser, Sian V Stinchcombe, Bernadette Nazareth, Matthew J Ellington, Stephen D Bentley, Geoffrey P Smith, Julian Parkhill, Sharon J Peacock.   

Abstract

Two Southeast Asian students attending the same school in the United Kingdom presented with pulmonary tuberculosis. An epidemiological investigation failed to link the two cases, and drug resistance profiles of the Mycobacterium tuberculosis isolates were discrepant. Whole-genome sequencing of the isolates found them to be genetically identical, suggesting a missed transmission event.

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Year:  2012        PMID： 23175259      PMCID： PMC3553910          DOI： 10.1128/JCM.02279-12

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  11 in total

1.  Mutations in gidB confer low-level streptomycin resistance in Mycobacterium tuberculosis.

Authors:  Sharon Y Wong; Jong Seok Lee; Hyun Kyung Kwak; Laura E Via; Helena I M Boshoff; Clifton E Barry
Journal:  Antimicrob Agents Chemother       Date:  2011-03-28       Impact factor: 5.191

2.  Whole-genome sequencing and social-network analysis of a tuberculosis outbreak.

Authors:  Jennifer L Gardy; James C Johnston; Shannan J Ho Sui; Victoria J Cook; Lena Shah; Elizabeth Brodkin; Shirley Rempel; Richard Moore; Yongjun Zhao; Robert Holt; Richard Varhol; Inanc Birol; Marcus Lem; Meenu K Sharma; Kevin Elwood; Steven J M Jones; Fiona S L Brinkman; Robert C Brunham; Patrick Tang
Journal:  N Engl J Med       Date:  2011-02-24       Impact factor: 91.245

3.  Microevolution of extensively drug-resistant tuberculosis in Russia.

Authors:  Nicola Casali; Vladyslav Nikolayevskyy; Yanina Balabanova; Olga Ignatyeva; Irina Kontsevaya; Simon R Harris; Stephen D Bentley; Julian Parkhill; Sergey Nejentsev; Sven E Hoffner; Rolf D Horstmann; Timothy Brown; Francis Drobniewski
Journal:  Genome Res       Date:  2012-01-31       Impact factor: 9.043

Review 4.  Rationale and uses of a public HIV drug-resistance database.

Authors:  Robert W Shafer
Journal:  J Infect Dis       Date:  2006-09-15       Impact factor: 5.226

5.  The clinical relevance of Mycobacterial pharmacogenetics.

Authors:  R M Warren; E M Streicher; N C Gey van Pittius; B J Marais; G D van der Spuy; T C Victor; F Sirgel; P R Donald; P D van Helden
Journal:  Tuberculosis (Edinb)       Date:  2009-05-01       Impact factor: 3.131

6.  Evolution of MRSA during hospital transmission and intercontinental spread.

Authors:  Simon R Harris; Edward J Feil; Matthew T G Holden; Michael A Quail; Emma K Nickerson; Narisara Chantratita; Susana Gardete; Ana Tavares; Nick Day; Jodi A Lindsay; Jonathan D Edgeworth; Hermínia de Lencastre; Julian Parkhill; Sharon J Peacock; Stephen D Bentley
Journal:  Science       Date:  2010-01-22       Impact factor: 47.728

7.  Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak.

Authors:  Claudio U Köser; Matthew T G Holden; Matthew J Ellington; Edward J P Cartwright; Nicholas M Brown; Amanda L Ogilvy-Stuart; Li Yang Hsu; Claire Chewapreecha; Nicholas J Croucher; Simon R Harris; Mandy Sanders; Mark C Enright; Gordon Dougan; Stephen D Bentley; Julian Parkhill; Louise J Fraser; Jason R Betley; Ole B Schulz-Trieglaff; Geoffrey P Smith; Sharon J Peacock
Journal:  N Engl J Med       Date:  2012-06-14       Impact factor: 91.245

Review 8.  Routine use of microbial whole genome sequencing in diagnostic and public health microbiology.

Authors:  Claudio U Köser; Matthew J Ellington; Edward J P Cartwright; Stephen H Gillespie; Nicholas M Brown; Mark Farrington; Matthew T G Holden; Gordon Dougan; Stephen D Bentley; Julian Parkhill; Sharon J Peacock
Journal:  PLoS Pathog       Date:  2012-08-02       Impact factor: 6.823

9.  "Pseudo-Beijing": evidence for convergent evolution in the direct repeat region of Mycobacterium tuberculosis.

Authors:  Lukas Fenner; Bijaya Malla; Béatrice Ninet; Olivier Dubuis; David Stucki; Sonia Borrell; Thembela Huna; Thomas Bodmer; Matthias Egger; Sebastien Gagneux
Journal:  PLoS One       Date:  2011-09-13       Impact factor: 3.240

10.  Genotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologies.

Authors:  Iñaki Comas; Susanne Homolka; Stefan Niemann; Sebastien Gagneux
Journal:  PLoS One       Date:  2009-11-12       Impact factor: 3.240
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  28 in total

1.  Consequences of whiB7 (Rv3197A) mutations in Beijing genotype isolates of the Mycobacterium tuberculosis complex.

Authors:  Claudio U Köser; Josephine M Bryant; Julian Parkhill; Sharon J Peacock
Journal:  Antimicrob Agents Chemother       Date:  2013-07       Impact factor: 5.191

2.  Rapid whole-genome sequencing for detection and characterization of microorganisms directly from clinical samples.

Authors:  Henrik Hasman; Dhany Saputra; Thomas Sicheritz-Ponten; Ole Lund; Christina Aaby Svendsen; Niels Frimodt-Møller; Frank M Aarestrup
Journal:  J Clin Microbiol       Date:  2013-10-30       Impact factor: 5.948

3.  Long term effect of gut microbiota transfer on diabetes development.

Authors:  Jian Peng; Sukanya Narasimhan; Julian R Marchesi; Andrew Benson; F Susan Wong; Li Wen
Journal:  J Autoimmun       Date:  2014-04-22       Impact factor: 7.094

Review 4.  Current and emerging Legionella diagnostics for laboratory and outbreak investigations.

Authors:  Jeffrey W Mercante; Jonas M Winchell
Journal:  Clin Microbiol Rev       Date:  2015-01       Impact factor: 26.132

Review 5.  The implications of whole-genome sequencing in the control of tuberculosis.

Authors:  Robyn S Lee; Marcel A Behr
Journal:  Ther Adv Infect Dis       Date:  2015-12-30

Review 6.  A microbiological revolution meets an ancient disease: improving the management of tuberculosis with genomics.

Authors:  Marta Wlodarska; James C Johnston; Jennifer L Gardy; Patrick Tang
Journal:  Clin Microbiol Rev       Date:  2015-04       Impact factor: 26.132

Review 7.  Epidemiology, Biology, and Impact of Clonal Pseudomonas aeruginosa Infections in Cystic Fibrosis.

Authors:  Michael D Parkins; Ranjani Somayaji; Valerie J Waters
Journal:  Clin Microbiol Rev       Date:  2018-08-29       Impact factor: 26.132

8.  Whole-genome sequencing of the Mycobacterium tuberculosis Manila sublineage results in less clustering and better resolution than mycobacterial interspersed repetitive-unit-variable-number tandem-repeat (MIRU-VNTR) typing and spoligotyping.

Authors:  F B Jamieson; S Teatero; J L Guthrie; A Neemuchwala; N Fittipaldi; C Mehaffy
Journal:  J Clin Microbiol       Date:  2014-07-30       Impact factor: 5.948

Review 9.  Data for action: collection and use of local data to end tuberculosis.

Authors:  Grant Theron; Helen E Jenkins; Frank Cobelens; Ibrahim Abubakar; Aamir J Khan; Ted Cohen; David W Dowdy
Journal:  Lancet       Date:  2015-10-26       Impact factor: 79.321

10.  Read and assembly metrics inconsequential for clinical utility of whole-genome sequencing in mapping outbreaks.

Authors:  Simon R Harris; M E Török; Edward J P Cartwright; Michael A Quail; Sharon J Peacock; Julian Parkhill
Journal:  Nat Biotechnol       Date:  2013-07       Impact factor: 54.908
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