Literature DB >> 23169995

A novel method for comparative analysis of retinal specialization traits from topographic maps.

Bret A Moore1, Jason M Kamilar, Shaun P Collin, Olaf R P Bininda-Emonds, Nathaniel J Dominy, Margaret I Hall, Christopher P Heesy, Sönke Johnsen, Thomas J Lisney, Ellis R Loew, Gillian Moritz, Saúl S Nava, Eric Warrant, Kara E Yopak, Esteban Fernández-Juricic.   

Abstract

Vertebrates possess different types of retinal specializations that vary in number, size, shape, and position in the retina. This diversity in retinal configuration has been revealed through topographic maps, which show variations in neuron density across the retina. Although topographic maps of about 300 vertebrates are available, there is no method for characterizing retinal traits quantitatively. Our goal is to present a novel method to standardize information on the position of the retinal specializations and changes in retinal ganglion cell (RGC) density across the retina from published topographic maps. We measured the position of the retinal specialization using two Cartesian coordinates and the gradient in cell density by sampling ganglion cell density values along four axes (nasal, temporal, ventral, and dorsal). Using this information, along with the peak and lowest RGC densities, we conducted discriminant function analyses (DFAs) to establish if this method is sensitive to distinguish three common types of retinal specializations (fovea, area, and visual streak). The discrimination ability of the model was higher when considering terrestrial (78%-80% correct classification) and aquatic (77%-86% correct classification) species separately than together. Our method can be used in the future to test specific hypotheses on the differences in retinal morphology between retinal specializations and the association between retinal morphology and behavioral and ecological traits using comparative methods controlling for phylogenetic effects.

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Year:  2012        PMID: 23169995     DOI: 10.1167/12.12.13

Source DB:  PubMed          Journal:  J Vis        ISSN: 1534-7362            Impact factor:   2.240


  14 in total

1.  Retinal topography maps in R: new tools for the analysis and visualization of spatial retinal data.

Authors:  Brian A Cohn; Shaun P Collin; Peter C Wainwright; Lars Schmitz
Journal:  J Vis       Date:  2015       Impact factor: 2.240

Review 2.  The subtlety of simple eyes: the tuning of visual fields to perceptual challenges in birds.

Authors:  Graham R Martin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-01-06       Impact factor: 6.237

3.  Müller cell alignment in bird fovea: possible role in vision.

Authors:  Serguei Skatchkov; Mikhail Inyushin; Lidia Zueva; Vladimir Makarov; Astrid Zayas-Santiago; Tatiana Golubeva; Elena Korneeva; Alexey Savvinov; Misty Eaton
Journal:  J Neurosci Neuroeng       Date:  2014-12-01

4.  Fgf8 Expression and Degradation of Retinoic Acid Are Required for Patterning a High-Acuity Area in the Retina.

Authors:  Susana da Silva; Constance L Cepko
Journal:  Dev Cell       Date:  2017-06-22       Impact factor: 12.270

5.  Vision in two cyprinid fish: implications for collective behavior.

Authors:  Diana Pita; Bret A Moore; Luke P Tyrrell; Esteban Fernández-Juricic
Journal:  PeerJ       Date:  2015-08-04       Impact factor: 2.984

6.  Niche convergence suggests functionality of the nocturnal fovea.

Authors:  Gillian L Moritz; Amanda D Melin; Fred Tuh Yit Yu; Henry Bernard; Perry S Ong; Nathaniel J Dominy
Journal:  Front Integr Neurosci       Date:  2014-07-25

7.  Individual variation in cone photoreceptor density in house sparrows: implications for between-individual differences in visual resolution and chromatic contrast.

Authors:  Amanda L Ensminger; Esteban Fernández-Juricic
Journal:  PLoS One       Date:  2014-11-05       Impact factor: 3.240

8.  A comparison of spatial analysis methods for the construction of topographic maps of retinal cell density.

Authors:  Eduardo Garza-Gisholt; Jan M Hemmi; Nathan S Hart; Shaun P Collin
Journal:  PLoS One       Date:  2014-04-18       Impact factor: 3.240

9.  Looking above the prairie: localized and upward acute vision in a native grassland bird.

Authors:  Luke P Tyrrell; Bret A Moore; Christopher Loftis; Esteban Fernández-Juricic
Journal:  Sci Rep       Date:  2013-12-02       Impact factor: 4.379

10.  FOVEA: a new program to standardize the measurement of foveal pit morphology.

Authors:  Bret A Moore; Innfarn Yoo; Luke P Tyrrell; Bedrich Benes; Esteban Fernandez-Juricic
Journal:  PeerJ       Date:  2016-04-11       Impact factor: 2.984

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