Literature DB >> 23169490

Genomic analysis of Meckel-Gruber syndrome in Arabs reveals marked genetic heterogeneity and novel candidate genes.

Ranad Shaheen1, Eissa Faqeih, Muneera J Alshammari, Abdulrahman Swaid, Lihadh Al-Gazali, Elham Mardawi, Shinu Ansari, Sameera Sogaty, Mohammed Z Seidahmed, Muhammed I AlMotairi, Chantal Farra, Wesam Kurdi, Shatha Al-Rasheed, Fowzan S Alkuraya.   

Abstract

Meckel-Gruber syndrome (MKS, OMIM #249000) is a multiple congenital malformation syndrome that represents the severe end of the ciliopathy phenotypic spectrum. Despite the relatively common occurrence of this syndrome among Arabs, little is known about its genetic architecture in this population. This is a series of 18 Arab families with MKS, who were evaluated clinically and studied using autozygome-guided mutation analysis and exome sequencing. We show that autozygome-guided candidate gene analysis identified the underlying mutation in the majority (n=12, 71%). Exome sequencing revealed a likely pathogenic mutation in three novel candidate MKS disease genes. These include C5orf42, Ellis-van-Creveld disease gene EVC2 and SEC8 (also known as EXOC4), which encodes an exocyst protein with an established role in ciliogenesis. This is the largest and most comprehensive genomic study on MKS in Arabs and the results, in addition to revealing genetic and allelic heterogeneity, suggest that previously reported disease genes and the novel candidates uncovered by this study account for the overwhelming majority of MKS patients in our population.

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Year:  2012        PMID: 23169490      PMCID: PMC3722952          DOI: 10.1038/ejhg.2012.254

Source DB:  PubMed          Journal:  Eur J Hum Genet        ISSN: 1018-4813            Impact factor:   4.246


  44 in total

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Authors:  Irene E Zohn; Yingqiu Li; Edward Y Skolnik; Kathryn V Anderson; Jiahuai Han; Lee Niswander
Journal:  Cell       Date:  2006-06-02       Impact factor: 41.582

Review 2.  Genetic diversity among the Arabs.

Authors:  Ahmad S Teebi; Saeed A Teebi
Journal:  Community Genet       Date:  2005

3.  The transmembrane protein meckelin (MKS3) is mutated in Meckel-Gruber syndrome and the wpk rat.

Authors:  Ursula M Smith; Mark Consugar; Louise J Tee; Brandy M McKee; Esther N Maina; Shelly Whelan; Neil V Morgan; Erin Goranson; Paul Gissen; Stacie Lilliquist; Irene A Aligianis; Christopher J Ward; Shanaz Pasha; Rachaneekorn Punyashthiti; Saghira Malik Sharif; Philip A Batman; Christopher P Bennett; C Geoffrey Woods; Carole McKeown; Martine Bucourt; Caroline A Miller; Phillip Cox; Lihadh Algazali; Richard C Trembath; Vicente E Torres; Tania Attie-Bitach; Deirdre A Kelly; Eamonn R Maher; Vincent H Gattone; Peter C Harris; Colin A Johnson
Journal:  Nat Genet       Date:  2006-01-15       Impact factor: 38.330

4.  Study of autosomal recessive osteogenesis imperfecta in Arabia reveals a novel locus defined by TMEM38B mutation.

Authors:  Ranad Shaheen; Anas M Alazami; Muneera J Alshammari; Eissa Faqeih; Nadia Alhashmi; Noon Mousa; Aisha Alsinani; Shinu Ansari; Fatema Alzahrani; Mohammed Al-Owain; Zayed S Alzayed; Fowzan S Alkuraya
Journal:  J Med Genet       Date:  2012-10       Impact factor: 6.318

5.  Molecular diagnostics of Meckel-Gruber syndrome highlights phenotypic differences between MKS1 and MKS3.

Authors:  Mark B Consugar; Vickie J Kubly; Donna J Lager; Cynthia J Hommerding; Wai Chong Wong; Egbert Bakker; Vincent H Gattone; Vicente E Torres; Martijn H Breuning; Peter C Harris
Journal:  Hum Genet       Date:  2007-03-22       Impact factor: 4.132

6.  The Meckel-Gruber syndrome gene, MKS3, is mutated in Joubert syndrome.

Authors:  Lekbir Baala; Stephane Romano; Rana Khaddour; Sophie Saunier; Ursula M Smith; Sophie Audollent; Catherine Ozilou; Laurence Faivre; Nicole Laurent; Bernard Foliguet; Arnold Munnich; Stanislas Lyonnet; Remi Salomon; Ferechte Encha-Razavi; Marie-Claire Gubler; Nathalie Boddaert; Pascale de Lonlay; Colin A Johnson; Michel Vekemans; Corinne Antignac; Tania Attie-Bitach
Journal:  Am J Hum Genet       Date:  2006-11-15       Impact factor: 11.025

7.  Pleiotropic effects of CEP290 (NPHP6) mutations extend to Meckel syndrome.

Authors:  Lekbir Baala; Sophie Audollent; Jéléna Martinovic; Catherine Ozilou; Marie-Claude Babron; Sivanthiny Sivanandamoorthy; Sophie Saunier; Rémi Salomon; Marie Gonzales; Eleanor Rattenberry; Chantal Esculpavit; Annick Toutain; Claude Moraine; Philippe Parent; Pascale Marcorelles; Marie-Christine Dauge; Joëlle Roume; Martine Le Merrer; Vardiella Meiner; Karen Meir; Françoise Menez; Anne-Marie Beaufrère; Christine Francannet; Julia Tantau; Martine Sinico; Yves Dumez; Fiona MacDonald; Arnold Munnich; Stanislas Lyonnet; Marie-Claire Gubler; Emmanuelle Génin; Colin A Johnson; Michel Vekemans; Férechté Encha-Razavi; Tania Attié-Bitach
Journal:  Am J Hum Genet       Date:  2007-06-04       Impact factor: 11.025

8.  Syndromes with cephaloceles.

Authors:  M M Cohen; R J Lemire
Journal:  Teratology       Date:  1982-04

9.  Mutations in the gene encoding the basal body protein RPGRIP1L, a nephrocystin-4 interactor, cause Joubert syndrome.

Authors:  Heleen H Arts; Dan Doherty; Sylvia E C van Beersum; Melissa A Parisi; Stef J F Letteboer; Nicholas T Gorden; Theo A Peters; Tina Märker; Krysta Voesenek; Aileen Kartono; Hamit Ozyurek; Federico M Farin; Hester Y Kroes; Uwe Wolfrum; Han G Brunner; Frans P M Cremers; Ian A Glass; Nine V A M Knoers; Ronald Roepman
Journal:  Nat Genet       Date:  2007-06-10       Impact factor: 38.330

10.  The Meckel-Gruber Syndrome proteins MKS1 and meckelin interact and are required for primary cilium formation.

Authors:  Helen R Dawe; Ursula M Smith; Andrew R Cullinane; Dianne Gerrelli; Phillip Cox; Jose L Badano; Sarah Blair-Reid; Nisha Sriram; Nicholas Katsanis; Tania Attie-Bitach; Simon C Afford; Andrew J Copp; Deirdre A Kelly; Keith Gull; Colin A Johnson
Journal:  Hum Mol Genet       Date:  2006-12-21       Impact factor: 6.150

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  30 in total

1.  Novel Jbts17 mutant mouse model of Joubert syndrome with cilia transition zone defects and cerebellar and other ciliopathy related anomalies.

Authors:  Rama Rao Damerla; Cheng Cui; George C Gabriel; Xiaoqin Liu; Branch Craige; Brian C Gibbs; Richard Francis; You Li; Bishwanath Chatterjee; Jovenal T San Agustin; Thibaut Eguether; Ramiah Subramanian; George B Witman; Jacques L Michaud; Gregory J Pazour; Cecilia W Lo
Journal:  Hum Mol Genet       Date:  2015-04-15       Impact factor: 6.150

Review 2.  From Planar Cell Polarity to Ciliogenesis and Back: The Curious Tale of the PPE and CPLANE proteins.

Authors:  Paul N Adler; John B Wallingford
Journal:  Trends Cell Biol       Date:  2017-01-30       Impact factor: 20.808

3.  Joubert syndrome: a model for untangling recessive disorders with extreme genetic heterogeneity.

Authors:  R Bachmann-Gagescu; J C Dempsey; I G Phelps; B J O'Roak; D M Knutzen; T C Rue; G E Ishak; C R Isabella; N Gorden; J Adkins; E A Boyle; N de Lacy; D O'Day; A Alswaid; Radha Ramadevi A; L Lingappa; C Lourenço; L Martorell; À Garcia-Cazorla; H Ozyürek; G Haliloğlu; B Tuysuz; M Topçu; P Chance; M A Parisi; I A Glass; J Shendure; D Doherty
Journal:  J Med Genet       Date:  2015-06-19       Impact factor: 6.318

Review 4.  Whole exome sequencing: a state-of-the-art approach for defining (and exploring!) genetic landscapes in pediatric nephrology.

Authors:  Ashima Gulati; Stefan Somlo
Journal:  Pediatr Nephrol       Date:  2017-06-29       Impact factor: 3.714

5.  Clinical utility gene card for: Meckel syndrome - update 2016.

Authors:  Carsten Bergmann; Valeska Frank; Riitta Salonen
Journal:  Eur J Hum Genet       Date:  2016-04-20       Impact factor: 4.246

Review 6.  The application of next-generation sequencing in the autozygosity mapping of human recessive diseases.

Authors:  Fowzan S Alkuraya
Journal:  Hum Genet       Date:  2013-08-02       Impact factor: 4.132

7.  The exocyst is required for photoreceptor ciliogenesis and retinal development.

Authors:  Glenn P Lobo; Diana Fulmer; Lilong Guo; Xiaofeng Zuo; Yujing Dang; Seok-Hyung Kim; Yanhui Su; Kola George; Elisabeth Obert; Ben Fogelgren; Deepak Nihalani; Russell A Norris; Bärbel Rohrer; Joshua H Lipschutz
Journal:  J Biol Chem       Date:  2017-07-20       Impact factor: 5.157

8.  Loss of ciliary transition zone protein TMEM107 leads to heterotaxy in mice.

Authors:  Natalia A Shylo; Elli Emmanouil; Dylan Ramrattan; Scott D Weatherbee
Journal:  Dev Biol       Date:  2019-12-27       Impact factor: 3.582

9.  A polymorphism in the DNA repair domain of APEX1 is associated with the radiation-induced pneumonitis risk among lung cancer patients after radiotherapy.

Authors:  H Li; G Liu; L Xia; Q Zhou; J Xiong; J Xian; M Du; L Zhang; L Liao; X Su; Z Li; Q Luo; Y Cheng; T Zhang; D Wang; Z-Z Yang
Journal:  Br J Radiol       Date:  2014-06-02       Impact factor: 3.039

Review 10.  Fifteen years of research on oral-facial-digital syndromes: from 1 to 16 causal genes.

Authors:  Ange-Line Bruel; Brunella Franco; Yannis Duffourd; Julien Thevenon; Laurence Jego; Estelle Lopez; Jean-François Deleuze; Diane Doummar; Rachel H Giles; Colin A Johnson; Martijn A Huynen; Véronique Chevrier; Lydie Burglen; Manuela Morleo; Isabelle Desguerres; Geneviève Pierquin; Bérénice Doray; Brigitte Gilbert-Dussardier; Bruno Reversade; Elisabeth Steichen-Gersdorf; Clarisse Baumann; Inusha Panigrahi; Anne Fargeot-Espaliat; Anne Dieux; Albert David; Alice Goldenberg; Ernie Bongers; Dominique Gaillard; Jesús Argente; Bernard Aral; Nadège Gigot; Judith St-Onge; Daniel Birnbaum; Shubha R Phadke; Valérie Cormier-Daire; Thibaut Eguether; Gregory J Pazour; Vicente Herranz-Pérez; Jaclyn S Goldstein; Laurent Pasquier; Philippe Loget; Sophie Saunier; André Mégarbané; Olivier Rosnet; Michel R Leroux; John B Wallingford; Oliver E Blacque; Maxence V Nachury; Tania Attie-Bitach; Jean-Baptiste Rivière; Laurence Faivre; Christel Thauvin-Robinet
Journal:  J Med Genet       Date:  2017-03-13       Impact factor: 6.318

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