Literature DB >> 23166395

Epigenetic inheritance mediated by histone lysine methylation: maintaining transcriptional states without the precise restoration of marks?

Chang Huang1, Mo Xu, Bing Zhu.   

Abstract

'Epigenetics' has been defined as the study of 'mitotically and/or meiotically heritable changes in gene function that cannot be explained by changes in DNA sequence'. Chromatin modifications are major carriers of epigenetic information that both reflect and affect the transcriptional states of underlying genes. Several histone modifications are key players that are responsible for classical epigenetic phenomena. However, the mechanisms by which cells pass their histone modifications to daughter cells through mitotic division remain to be unveiled. Here, we review recent progress in the field and conclude that epigenetic modifications are not precisely maintained at a near-mononucleosome level of precision. We also suggest that transcription repression may be maintained by a buffer system that can tolerate a certain degree of fluctuation in repressive histone modification levels. This buffer system protects the repressed genes from potential improper derepression triggered by chromatin modification-level fluctuation resulting from cellular events, such as the cell-cycle-dependent dilution of the chromatin modifications and local responses to environmental cues.

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Year:  2013        PMID: 23166395      PMCID: PMC3539360          DOI: 10.1098/rstb.2011.0332

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  62 in total

1.  Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly.

Authors:  J Nakayama ; J C Rice; B D Strahl; C D Allis; S I Grewal
Journal:  Science       Date:  2001-03-15       Impact factor: 47.728

2.  Histone methyltransferase activity of a Drosophila Polycomb group repressor complex.

Authors:  Jürg Müller; Craig M Hart; Nicole J Francis; Marcus L Vargas; Aditya Sengupta; Brigitte Wild; Ellen L Miller; Michael B O'Connor; Robert E Kingston; Jeffrey A Simon
Journal:  Cell       Date:  2002-10-18       Impact factor: 41.582

3.  Role of histone H3 lysine 27 methylation in Polycomb-group silencing.

Authors:  Ru Cao; Liangjun Wang; Hengbin Wang; Li Xia; Hediye Erdjument-Bromage; Paul Tempst; Richard S Jones; Yi Zhang
Journal:  Science       Date:  2002-09-26       Impact factor: 47.728

4.  Direct interaction between DNMT1 and G9a coordinates DNA and histone methylation during replication.

Authors:  Pierre-Olivier Estève; Hang Gyeong Chin; Andrea Smallwood; George R Feehery; Omkaram Gangisetty; Adam R Karpf; Michael F Carey; Sriharsa Pradhan
Journal:  Genes Dev       Date:  2006-11-03       Impact factor: 11.361

5.  Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain.

Authors:  A J Bannister; P Zegerman; J F Partridge; E A Miska; J O Thomas; R C Allshire; T Kouzarides
Journal:  Nature       Date:  2001-03-01       Impact factor: 49.962

6.  Set domain-containing protein, G9a, is a novel lysine-preferring mammalian histone methyltransferase with hyperactivity and specific selectivity to lysines 9 and 27 of histone H3.

Authors:  M Tachibana; K Sugimoto; T Fukushima; Y Shinkai
Journal:  J Biol Chem       Date:  2001-04-20       Impact factor: 5.157

7.  Histone methyltransferase activity associated with a human multiprotein complex containing the Enhancer of Zeste protein.

Authors:  Andrei Kuzmichev; Kenichi Nishioka; Hediye Erdjument-Bromage; Paul Tempst; Danny Reinberg
Journal:  Genes Dev       Date:  2002-11-15       Impact factor: 11.361

8.  Regulation of chromatin structure by site-specific histone H3 methyltransferases.

Authors:  S Rea; F Eisenhaber; D O'Carroll; B D Strahl; Z W Sun; M Schmid; S Opravil; K Mechtler; C P Ponting; C D Allis; T Jenuwein
Journal:  Nature       Date:  2000-08-10       Impact factor: 49.962

9.  Loss of the Suv39h histone methyltransferases impairs mammalian heterochromatin and genome stability.

Authors:  A H Peters; D O'Carroll; H Scherthan; K Mechtler; S Sauer; C Schöfer; K Weipoltshammer; M Pagani; M Lachner; A Kohlmaier; S Opravil; M Doyle; M Sibilia; T Jenuwein
Journal:  Cell       Date:  2001-11-02       Impact factor: 41.582

10.  Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics.

Authors:  Shao-En Ong; Blagoy Blagoev; Irina Kratchmarova; Dan Bach Kristensen; Hanno Steen; Akhilesh Pandey; Matthias Mann
Journal:  Mol Cell Proteomics       Date:  2002-05       Impact factor: 5.911

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  22 in total

1.  Mammalian epigenetics in biology and medicine.

Authors:  Fumitoshi Ishino; Yoichi Shinkai; Emma Whitelaw
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-01-05       Impact factor: 6.237

Review 2.  Mechanisms of epigenetic memory and addiction.

Authors:  Luis M Tuesta; Yi Zhang
Journal:  EMBO J       Date:  2014-04-28       Impact factor: 11.598

3.  The Arabidopsis Nodulin Homeobox Factor AtNDX Interacts with AtRING1A/B and Negatively Regulates Abscisic Acid Signaling.

Authors:  Yujuan Zhu; Xiaoying Hu; Ying Duan; Shaofang Li; Yu Wang; Amin Ur Rehman; Junna He; Jing Zhang; Deping Hua; Li Yang; Li Wang; Zhizhong Chen; Chuanyou Li; Baoshan Wang; Chun-Peng Song; Qianwen Sun; Shuhua Yang; Zhizhong Gong
Journal:  Plant Cell       Date:  2020-01-09       Impact factor: 11.277

4.  Impairment of preimplantation porcine embryo development by histone demethylase KDM5B knockdown through disturbance of bivalent H3K4me3-H3K27me3 modifications.

Authors:  Jiaojiao Huang; Hongyong Zhang; Xianlong Wang; Kyle B Dobbs; Jing Yao; Guosong Qin; Kristin Whitworth; Eric M Walters; Randall S Prather; Jianguo Zhao
Journal:  Biol Reprod       Date:  2015-01-21       Impact factor: 4.285

5.  Cofactors-loaded quaternary structure of lysine-specific demethylase 5C (KDM5C) protein: Computational model.

Authors:  Yunhui Peng; Emil Alexov
Journal:  Proteins       Date:  2016-10-01

6.  Imprecise DNMT1 activity coupled with neighbor-guided correction enables robust yet flexible epigenetic inheritance.

Authors:  Qiujun Wang; Guang Yu; Xuan Ming; Weikun Xia; Xiguang Xu; Yu Zhang; Wenhao Zhang; Yuanyuan Li; Chunyi Huang; Hehuang Xie; Bing Zhu; Wei Xie
Journal:  Nat Genet       Date:  2020-07-20       Impact factor: 38.330

Review 7.  Choreography of parental histones in damaged chromatin.

Authors:  Juliette Dabin; Sophie E Polo
Journal:  Nucleus       Date:  2017-02-23       Impact factor: 4.197

8.  Two distinct modes for propagation of histone PTMs across the cell cycle.

Authors:  Constance Alabert; Teresa K Barth; Nazaret Reverón-Gómez; Simone Sidoli; Andreas Schmidt; Ole N Jensen; Axel Imhof; Anja Groth
Journal:  Genes Dev       Date:  2015-03-15       Impact factor: 11.361

Review 9.  The Fork in the Road: Histone Partitioning During DNA Replication.

Authors:  Anthony T Annunziato
Journal:  Genes (Basel)       Date:  2015-06-23       Impact factor: 4.096

10.  Recognition of H3K9 methylation by GLP is required for efficient establishment of H3K9 methylation, rapid target gene repression, and mouse viability.

Authors:  Nan Liu; Zhuqiang Zhang; Hui Wu; Yonghua Jiang; Lingjun Meng; Jun Xiong; Zuodong Zhao; Xiaohua Zhou; Jia Li; Hong Li; Yong Zheng; She Chen; Tao Cai; Shaorong Gao; Bing Zhu
Journal:  Genes Dev       Date:  2015-01-30       Impact factor: 11.361

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