Literature DB >> 23159359

Challenges and recommendations for obtaining chemical structures of industry-provided repurposing candidates.

Christopher Southan1, Antony J Williams, Sean Ekins.   

Abstract

There is an expanding amount of interest directed at the repurposing and repositioning of drugs, as well as how in silico methods can assist these endeavors. Recent repurposing project tendering calls by the National Center for Advancing Translational Sciences (USA) and the Medical Research Council (UK) have included compound information and pharmacological data. However, none of the internal company development code names were assigned to chemical structures in the official documentation. This not only abrogates in silico analysis to support repurposing but consequently necessitates data gathering and curation to assign structures. Here, we describe the approaches, results and major challenges associated with this.
Copyright © 2012 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2012        PMID: 23159359     DOI: 10.1016/j.drudis.2012.11.005

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  13 in total

Review 1.  Pioneering government-sponsored drug repositioning collaborations: progress and learning.

Authors:  Donald E Frail; Madeleine Brady; K Jane Escott; Alison Holt; Hitesh J Sanganee; Menelas N Pangalos; Chris Watkins; Craig D Wegner
Journal:  Nat Rev Drug Discov       Date:  2015-11-20       Impact factor: 84.694

2.  Are bigger data sets better for machine learning? Fusing single-point and dual-event dose response data for Mycobacterium tuberculosis.

Authors:  Sean Ekins; Joel S Freundlich; Robert C Reynolds
Journal:  J Chem Inf Model       Date:  2014-07-17       Impact factor: 4.956

3.  Collaboration for rare disease drug discovery research.

Authors:  Nadia K Litterman; Michele Rhee; David C Swinney; Sean Ekins
Journal:  F1000Res       Date:  2014-10-31

4.  Parallel worlds of public and commercial bioactive chemistry data.

Authors:  Christopher A Lipinski; Nadia K Litterman; Christopher Southan; Antony J Williams; Alex M Clark; Sean Ekins
Journal:  J Med Chem       Date:  2014-12-04       Impact factor: 7.446

Review 5.  A brief review of recent Charcot-Marie-Tooth research and priorities.

Authors:  Sean Ekins; Nadia K Litterman; Renée J G Arnold; Robert W Burgess; Joel S Freundlich; Steven J Gray; Joseph J Higgins; Brett Langley; Dianna E Willis; Lucia Notterpek; David Pleasure; Michael W Sereda; Allison Moore
Journal:  F1000Res       Date:  2015-02-26

6.  Finding small molecules for the 'next Ebola'.

Authors:  Sean Ekins; Christopher Southan; Megan Coffee
Journal:  F1000Res       Date:  2015-02-27

7.  Tracking 20 years of compound-to-target output from literature and patents.

Authors:  Christopher Southan; Peter Varkonyi; Kiran Boppana; Sarma A R P Jagarlapudi; Sorel Muresan
Journal:  PLoS One       Date:  2013-10-29       Impact factor: 3.240

8.  Multifunctional Immunoliposomes Combining Catalase and PD-L1 Antibodies Overcome Tumor Hypoxia and Enhance Immunotherapeutic Effects Against Melanoma.

Authors:  Yu Hei; Binhong Teng; Ziqian Zeng; Siqi Zhang; Qian Li; Jijia Pan; Zuyuan Luo; Chunyang Xiong; Shicheng Wei
Journal:  Int J Nanomedicine       Date:  2020-03-10

Review 9.  Recent advances in drug repurposing using machine learning.

Authors:  Fabio Urbina; Ana C Puhl; Sean Ekins
Journal:  Curr Opin Chem Biol       Date:  2021-07-16       Impact factor: 8.822

10.  InChI in the wild: an assessment of InChIKey searching in Google.

Authors:  Christopher Southan
Journal:  J Cheminform       Date:  2013-02-11       Impact factor: 5.514

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