| Literature DB >> 23150740 |
Chao Li1, Shuheng Zhang, Huan Zhang, Lifang Pang, Kinman Lam, Chun Hui, Su Zhang.
Abstract
Accurate tumor, node, and metastasis (TNM) staging, especially N staging in gastric cancer or the metastasis on lymph node diagnosis, is a popular issue in clinical medical image analysis in which gemstone spectral imaging (GSI) can provide more information to doctors than conventional computed tomography (CT) does. In this paper, we apply machine learning methods on the GSI analysis of lymph node metastasis in gastric cancer. First, we use some feature selection or metric learning methods to reduce data dimension and feature space. We then employ the K-nearest neighbor classifier to distinguish lymph node metastasis from nonlymph node metastasis. The experiment involved 38 lymph node samples in gastric cancer, showing an overall accuracy of 96.33%. Compared with that of traditional diagnostic methods, such as helical CT (sensitivity 75.2% and specificity 41.8%) and multidetector computed tomography (82.09%), the diagnostic accuracy of lymph node metastasis is high. GSI-CT can then be the optimal choice for the preoperative diagnosis of patients with gastric cancer in the N staging.Entities:
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Year: 2012 PMID: 23150740 PMCID: PMC3488413 DOI: 10.1155/2012/876545
Source DB: PubMed Journal: Comput Math Methods Med ISSN: 1748-670X Impact factor: 2.238
Figure 1Flow chart classification on lymph node metastasis in gastric cancer.
Figure 2Gastric lymph node at 70 keV energy.
Distance metric learning methods used in this work.
| Unsupervised distance metric learning method | Principal component analysis (PCA) [ | |
|---|---|---|
| Supervised distance metric learning method | Global | Fisher discriminative analysis (FDA) [ |
| Relevant component analysis (RCA) [ | ||
| Local | Neighborhood component analysis (NCA) [ | |
| Local fisher discriminative analysis (LFDA) [ | ||
| Large margin nearest neighborhood (LMNN) [ |
Univariate analyses of the features of gastric lymph node metastasis arterial phase.
| No. | Feature | Mean ± Standard |
|
|
| AUC | SU | IG | |
|---|---|---|---|---|---|---|---|---|---|
| Negative | Positive | ||||||||
| 1 | 40 keV | 114.97 ± 29.84 | 177.79 ± 46.25 | 0.000 | 0.000 | 0.569 | 0.875 | 0.174 | 0.186 |
| 2 | 50 keV | 85.55 ± 18.81 | 123.69 ± 30.44 | 0.000 | 0.000 | 0.540 | 0.869 | 0.174 | 0.186 |
| 3 | 60 keV | 67.49 ± 13.36 | 90.63 ± 21.15 | 0.000 | 0.002 | 0.488 | 0.845 | 0.186 | 0.208 |
| 4 | 70 keV | 56.74 ± 11.53 | 68.93 ± 15.63 | 0.000 | 0.025 | 0.362 | 0.774 | 0.106 | 0.104 |
| 5 | 80 keV | 49.93 ± 11.53 | 54.84 ± 13.68 | 0.001 | 0.302 | 0.172 | 0.596 | 0.070 | 0.071 |
| 6 | 90 keV | 45.30 ± 12.05 | 45.27 ± 13.55 | 0.025 | 0.994 | −0.001 | 0.502 | 0.001 | 0.001 |
| 7 | 100 keV | 42.01 ± 12.18 | 39.08 ± 13.46 | 0.114 | 0.537 | −0.103 | 0.552 | 0.013 | 0.015 |
| 8 | 110 keV | 39.71 ± 12.37 | 34.68 ± 13.54 | 0.272 | 0.295 | −0.174 | 0.599 | 0.014 | 0.015 |
| 9 | 120 keV | 38.13 ± 12.56 | 31.62 ± 13.68 | 0.434 | 0.182 | −0.221 | 0.623 | 0.025 | 0.027 |
| 10 | 130 keV | 36.83 ± 12.73 | 29.25 ± 13.86 | 0.570 | 0.127 | −0.252 | 0.653 | 0.079 | 0.086 |
| 11 | 140 keV | 35.89 ± 12.86 | 27.41 ± 14.00 | 0.673 | 0.092 | −0.277 | 0.660 | 0.079 | 0.086 |
| 12 | Effective-Z | 8.18 ± 0.26 | 8.71 ± 0.35 | 0.000 | 0.000 | 0.601 | 0.896 | 0.317 | 0.336 |
| 13 | Calcium-Iodine | 819.69 ± 10.39 | 810.02 ± 10.70 | 0.284 | 0.015 | −0.391 | 0.754 | 0.126 | 0.127 |
| 14 | Calcium-Water | 14.05 ± 5.77 | 27.26 ± 9.12 | 0.000 | 0.000 | 0.594 | 0.899 | 0.315 | 0.343 |
| 15 | Iodine-Calcium | −579.62 ± 8.65 | −568.30 ± 9.31 | 0.000 | 0.001 | 0.500 | 0.822 | 0.174 | 0.165 |
| 16 | Iodine-Water | 10.10 ± 4.11 | 19.20 ± 6.22 | 0.000 | 0.000 | 0.596 | 0.896 | 0.315 | 0.343 |
| 17 | Water-Calcium | 1021.57 ± 15.74 | 1000.17 ± 18.21 | 0.000 | 0.002 | −0.494 | 0.818 | 0.174 | 0.165 |
| 18 | Water-Iodine | 1030.55 ± 13.74 | 1017.24 ± 15.20 | 0.291 | 0.017 | −0.386 | 0.734 | 0.174 | 0.165 |
Univariate analyses of the features of gastric lymph node metastasis venous phase.
| No. | Feature | Mean ± Standard |
|
|
| AUC | SU | IG | |
|---|---|---|---|---|---|---|---|---|---|
| Negative | Positive | ||||||||
| 19 | 40 keV | 168.56 ± 45.67 | 199.95 ± 51.33 | 0.000 | 0.087 | 0.282 | 0.684 | 0.070 | 0.072 |
| 20 | 50 keV | 117.94 ± 29.61 | 137.13 ± 32.85 | 0.000 | 0.102 | 0.269 | 0.673 | 0.070 | 0.072 |
| 21 | 60 keV | 86.91 ± 20.03 | 98.71 ± 22.14 | 0.000 | 0.135 | 0.247 | 0.653 | 0.086 | 0.092 |
| 22 | 70 keV | 67.54 ± 13.52 | 73.94 ± 14.14 | 0.000 | 0.209 | 0.209 | 0.620 | 0.106 | 0.104 |
| 23 | 80 keV | 55.09 ± 11.10 | 57.96 ± 11.31 | 0.000 | 0.481 | 0.118 | 0.559 | 0.110 | 0.122 |
| 24 | 90 keV | 46.76 ± 10.95 | 47.02 ± 11.50 | 0.000 | 0.949 | 0.011 | 0.535 | 0.018 | 0.018 |
| 25 | 100 keV | 41.08 ± 11.04 | 39.90 ± 12.06 | 0.000 | 0.781 | −0.047 | 0.562 | 0.018 | 0.020 |
| 26 | 110 keV | 37.08 ± 11.29 | 34.81 ± 12.73 | 0.003 | 0.611 | −0.085 | 0.599 | 0.011 | 0.011 |
| 27 | 120 keV | 34.25 ± 11.56 | 31.27 ± 13.30 | 0.012 | 0.521 | −0.107 | 0.613 | 0.011 | 0.011 |
| 28 | 130 keV | 32.10 ± 11.86 | 28.56 ± 13.79 | 0.028 | 0.461 | −0.123 | 0.613 | 0.011 | 0.011 |
| 29 | 140 keV | 30.37 ± 12.09 | 26.42 ± 14.19 | 0.052 | 0.423 | −0.134 | 0.626 | 0.018 | 0.019 |
| 30 | Effective-Z | 8.61 ± 0.38 | 8.87 ± 0.42 | 0.000 | 0.081 | 0.286 | 0.680 | 0.087 | 0.088 |
| 31 | Calcium-Iodine | 812.48 ± 9.36 | 807.83 ± 11.88 | 0.651 | 0.254 | −0.190 | 0.643 | 0.025 | 0.026 |
| 32 | Calcium-Water | 24.65 ± 9.57 | 31.44 ± 11.52 | 0.000 | 0.093 | 0.276 | 0.673 | 0.086 | 0.087 |
| 33 | Iodine-Calcium | −570.78 ± 8.89 | −565.23 ± 11.43 | 0.005 | 0.159 | 0.233 | 0.650 | 0.037 | 0.042 |
| 34 | Iodine-Water | 17.56 ± 6.43 | 22.25 ± 7.71 | 0.000 | 0.084 | 0.284 | 0.667 | 0.074 | 0.073 |
| 35 | Water-Calcium | 1005.60 ± 17.73 | 994.85 ± 22.22 | 0.011 | 0.162 | −0.231 | 0.657 | 0.037 | 0.042 |
| 36 | Water-Iodine | 1021.14 ± 13.95 | 1014.62 ± 17.03 | 0.631 | 0.270 | −0.184 | 0.636 | 0.011 | 0.011 |
Figure 3Monochromatic energy CT value in the arterial and venous phases of gastric lymph node metastasis.
Figure 4SFS-KNN feature selection procedures on raw and normalized data.
Classification performance of the SFS-KNN algorithm with different neighborhood sizes.
| Neighborhood size |
|
|
|
|
| |
|---|---|---|---|---|---|---|
| Pre-norm | Selected features | 14, 16 | 14, 31, 5, 15, 26, 4, 27, 21, 24, 9, 32, 2, 25, 8, 28, 3, 16 | 14, 31, 10, 36, 3, 25, 2 | 12, 31, 8, 29, 3, 15, 33, 1 | 12, 31, 23, 26, 3, 24, 30, 16 |
| Accuracy | 88.29% | 93.68% | 93.29% | 91.71% | 92.24% | |
|
| ||||||
| Norm | Selected features | 12, 30 | 20, 15, 11, 30, 5 | 12, 30, 31, 33, 14 | 12, 19, 20, 30, 5, 18, 25, 17, 34, 3, 32, 15, 24 | 12, 19, 29, 30, 8, 34, 33, 25, 15, 6, 24, 7, 10, 20, 17 |
| Accuracy | 93.95% | 96.45% | 96.58% | 96.18% | 97.89% | |
Figure 5Feature selection procedures with different mRMR criteria.
Classification performance of mRMR-KNN (MIQ) with different neighborhood sizes.
| Neighorhood size |
|
|
|
|
| |
|---|---|---|---|---|---|---|
| Prenorm | Sequence | 14, 19, 5, 17, 23, 12, 3, 16, 18, 22, 1, 15, 4, 2, 30, 13, 21, 32, 10, 33, 11, 34, 20, 35, 31, 25, 9, 29, 24, 8, 7, 26, 36, 27, 28, 6 | ||||
| Length | 1 | 28 | 28 | 35 | 1 | |
| Accuracy | 87.50% | 89.74% | 89.08% | 87.24% | 81.71% | |
| Norm | Sequence | 15, 21, 3, 30, 17, 24, 12, 14, 23, 5, 16, 22, 2, 18, 27, 1, 20, 4, 33, 25, 13, 19, 6, 28, 35, 26, 32, 7, 29, 34, 8, 31, 9, 11, 10, 36 | ||||
| Length | 4 | 2 | 2 | 2 | 10 | |
| Accuracy | 90.00% | 94.87% | 94.87% | 94.74% | 95.66% | |
Classification performance of mRMR-KNN (MID) with different neighborhood sizes.
| Neighborhood size |
|
|
|
|
| |
|---|---|---|---|---|---|---|
| Prenorm | Sequence | 12, 26, 22, 18, 3, 30, 14, 6, 19, 16, 36, 2, 17, 5, 1, 24, 35, 15, 23, 4, 34, 13, 29, 21, 7, 31, 11, 32, 25, 20, 9, 28, 33, 10, 8, 27 | ||||
| Length | 1 | 26 | 26 | 26 | 20 | |
| Accuracy | 87.50% | 90.39% | 89.34% | 87.11% | 82.50% | |
| Norm | Sequence | 15, 21, 2, 30, 24, 17, 5, 14, 23, 12, 18, 22, 27, 4, 16, 33, 7, 1, 20, 25, 13, 3, 29, 19, 6, 35, 28, 31, 8, 32, 26, 11, 34, 36, 9, 10 | ||||
| Norm | Length | 4 | 2 | 2 | 16 | |
| Accuracy | 89.74% | 94.87% | 94.87% | 95.66% | 95.26% | |
Figure 6Dimension reduction results of different metric learning methods in one validation.
Classification performance of the KNN algorithm with metric learning methods.
| Data (length of feature set) | Prenorm (4) | Norm 01 (5) |
|---|---|---|
| KNN | 80.79% | 83.68% |
| without PCA | 80.79% | 83.68% |
| PCA | 82.11% | 81.84% |
| PCA + LDA | 77.89% | 96.33% |
| PCA + RCA | 77.63% | 96.33% |
| PCA + LFDA | 76.97% | 96.33% |
| PCA + NCA | 76.58% | 86.32% |
| PCA + LMNN | 76.84% | 96.33% |