Literature DB >> 23150371

High-throughput RNA in situ hybridization in mouse retina.

Seth Blackshaw1.   

Abstract

The introduction of large-scale gene expression profiling studies has greatly increased the need to rapidly obtain high-quality cellular expression patterns of genes found to exhibit differential expression. The use of large-scale nonradioactive RNA in situ hybridization makes this possible, and greatly increases the general usefulness of this data. Here, we describe protocols for parallel analysis of up to 50 different gene-specific probes in mouse retinal sections.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23150371      PMCID: PMC3906123          DOI: 10.1007/978-1-62703-080-9_15

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  11 in total

1.  Antisense transcription in the mammalian transcriptome.

Authors:  S Katayama; Y Tomaru; T Kasukawa; K Waki; M Nakanishi; M Nakamura; H Nishida; C C Yap; M Suzuki; J Kawai; H Suzuki; P Carninci; Y Hayashizaki; C Wells; M Frith; T Ravasi; K C Pang; J Hallinan; J Mattick; D A Hume; L Lipovich; S Batalov; P G Engström; Y Mizuno; M A Faghihi; A Sandelin; A M Chalk; S Mottagui-Tabar; Z Liang; B Lenhard; C Wahlestedt
Journal:  Science       Date:  2005-09-02       Impact factor: 47.728

2.  Genome-wide atlas of gene expression in the adult mouse brain.

Authors:  Ed S Lein; Michael J Hawrylycz; Nancy Ao; Mikael Ayres; Amy Bensinger; Amy Bernard; Andrew F Boe; Mark S Boguski; Kevin S Brockway; Emi J Byrnes; Lin Chen; Li Chen; Tsuey-Ming Chen; Mei Chi Chin; Jimmy Chong; Brian E Crook; Aneta Czaplinska; Chinh N Dang; Suvro Datta; Nick R Dee; Aimee L Desaki; Tsega Desta; Ellen Diep; Tim A Dolbeare; Matthew J Donelan; Hong-Wei Dong; Jennifer G Dougherty; Ben J Duncan; Amanda J Ebbert; Gregor Eichele; Lili K Estin; Casey Faber; Benjamin A Facer; Rick Fields; Shanna R Fischer; Tim P Fliss; Cliff Frensley; Sabrina N Gates; Katie J Glattfelder; Kevin R Halverson; Matthew R Hart; John G Hohmann; Maureen P Howell; Darren P Jeung; Rebecca A Johnson; Patrick T Karr; Reena Kawal; Jolene M Kidney; Rachel H Knapik; Chihchau L Kuan; James H Lake; Annabel R Laramee; Kirk D Larsen; Christopher Lau; Tracy A Lemon; Agnes J Liang; Ying Liu; Lon T Luong; Jesse Michaels; Judith J Morgan; Rebecca J Morgan; Marty T Mortrud; Nerick F Mosqueda; Lydia L Ng; Randy Ng; Geralyn J Orta; Caroline C Overly; Tu H Pak; Sheana E Parry; Sayan D Pathak; Owen C Pearson; Ralph B Puchalski; Zackery L Riley; Hannah R Rockett; Stephen A Rowland; Joshua J Royall; Marcos J Ruiz; Nadia R Sarno; Katherine Schaffnit; Nadiya V Shapovalova; Taz Sivisay; Clifford R Slaughterbeck; Simon C Smith; Kimberly A Smith; Bryan I Smith; Andy J Sodt; Nick N Stewart; Kenda-Ruth Stumpf; Susan M Sunkin; Madhavi Sutram; Angelene Tam; Carey D Teemer; Christina Thaller; Carol L Thompson; Lee R Varnam; Axel Visel; Ray M Whitlock; Paul E Wohnoutka; Crissa K Wolkey; Victoria Y Wong; Matthew Wood; Murat B Yaylaoglu; Rob C Young; Brian L Youngstrom; Xu Feng Yuan; Bin Zhang; Theresa A Zwingman; Allan R Jones
Journal:  Nature       Date:  2006-12-06       Impact factor: 49.962

3.  Cellular responses to photoreceptor death in the rd1 mouse model of retinal degeneration.

Authors:  Claudio Punzo; Constance Cepko
Journal:  Invest Ophthalmol Vis Sci       Date:  2007-02       Impact factor: 4.799

4.  Comprehensive analysis of photoreceptor gene expression and the identification of candidate retinal disease genes.

Authors:  S Blackshaw; R E Fraioli; T Furukawa; C L Cepko
Journal:  Cell       Date:  2001-11-30       Impact factor: 41.582

5.  Simultaneous use of digoxigenin- and radiolabeled oligodeoxyribonucleotide probes for hybridization histochemistry.

Authors:  W S Young
Journal:  Neuropeptides       Date:  1989 May-Jun       Impact factor: 3.286

6.  A typology of photoreceptor gene expression patterns in the mouse.

Authors:  Joseph C Corbo; Connie A Myers; Karen A Lawrence; Ashutosh P Jadhav; Constance L Cepko
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-09       Impact factor: 11.205

7.  A single protocol to detect transcripts of various types and expression levels in neural tissue and cultured cells: in situ hybridization using digoxigenin-labelled cRNA probes.

Authors:  N Schaeren-Wiemers; A Gerfin-Moser
Journal:  Histochemistry       Date:  1993-12

8.  Genomic analysis of mouse retinal development.

Authors:  Seth Blackshaw; Sanjiv Harpavat; Jeff Trimarchi; Li Cai; Haiyan Huang; Winston P Kuo; Griffin Weber; Kyungjoon Lee; Rebecca E Fraioli; Seo-Hee Cho; Rachel Yung; Elizabeth Asch; Lucila Ohno-Machado; Wing H Wong; Constance L Cepko
Journal:  PLoS Biol       Date:  2004-06-29       Impact factor: 8.029

9.  Histone RNA in amphibian oocytes visualized by in situ hybridization to methacrylate-embedded tissue sections.

Authors:  M Jamrich; K A Mahon; E R Gavis; J G Gall
Journal:  EMBO J       Date:  1984-09       Impact factor: 11.598

10.  Individual retinal progenitor cells display extensive heterogeneity of gene expression.

Authors:  Jeffrey M Trimarchi; Michael B Stadler; Constance L Cepko
Journal:  PLoS One       Date:  2008-02-13       Impact factor: 3.240

View more
  4 in total

1.  Ldb1- and Rnf12-dependent regulation of Lhx2 controls the relative balance between neurogenesis and gliogenesis in the retina.

Authors:  Jimmy de Melo; Brian S Clark; Anand Venkataraman; Fion Shiau; Cristina Zibetti; Seth Blackshaw
Journal:  Development       Date:  2018-04-30       Impact factor: 6.868

2.  Optimized RNA ISH, RNA FISH and protein-RNA double labeling (IF/FISH) in Drosophila ovaries.

Authors:  Sandra G Zimmerman; Nathaniel C Peters; Ariel E Altaras; Celeste A Berg
Journal:  Nat Protoc       Date:  2013-10-10       Impact factor: 13.491

3.  The transcription factor Maz is essential for normal eye development.

Authors:  Olga Medina-Martinez; Meade Haller; Jill A Rosenfeld; Marisol A O'Neill; Dolores J Lamb; Milan Jamrich
Journal:  Dis Model Mech       Date:  2020-08-18       Impact factor: 5.758

4.  Rod genesis driven by mafba in an nrl knockout zebrafish model with altered photoreceptor composition and progressive retinal degeneration.

Authors:  Fei Liu; Yayun Qin; Yuwen Huang; Pan Gao; Jingzhen Li; Shanshan Yu; Danna Jia; Xiang Chen; Yuexia Lv; Jiayi Tu; Kui Sun; Yunqiao Han; James Reilly; Xinhua Shu; Qunwei Lu; Zhaohui Tang; Chengqi Xu; Daji Luo; Mugen Liu
Journal:  PLoS Genet       Date:  2022-03-04       Impact factor: 5.917

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.