Literature DB >> 23148103

Rubrivirga marina gen. nov., sp. nov., a member of the family Rhodothermaceae isolated from deep seawater.

Sanghwa Park1, Jaeho Song1, Susumu Yoshizawa1, Ahyoung Choi2, Jang-Cheon Cho2, Kazuhiro Kogure1.   

Abstract

Two aerobic, Gram-stain-negative, pale-red-pigmented and rod-shaped bacterial strains, designated SAORIC-26 and SAORIC-28(T), were isolated from seawater (3000 m depth) from the Pacific Ocean. Phylogenetic analysis based on their 16S rRNA gene sequences revealed that the novel isolates could be affiliated with the family Rhodothermaceae of the class Cytophagia. Strains SAORIC-26 and SAORIC-28(T) shared 99.7% pairwise sequence similarity with each other and showed less than 92.6% similarity with other cultivated members of the class Cytophagia. The strains were found to be non-motile, oxidase-positive, catalase-negative and able to hydrolyse gelatin and aesculin. The DNA G+C contents were determined to be 64.8-65.8 mol% and MK-7 was the predominant menaquinone. Summed feature 9 (iso-C17:1ω9c and/or C16:0 10-methyl), summed feature 3 (C16:1ω6c and/or C16:1ω7c) and iso-C15:0 were found to be the major cellular fatty acids. On the basis of this taxonomic study using a polyphasic approach, it was concluded that strains SAORIC-26 and SAORIC-28(T) represent a novel species of a new genus in the family Rhodothermaceae, for which the name Rubrivirga marina gen. nov., sp. nov. is proposed. The type strain of the type species of is SAORIC-28(T) (=KCTC 23867(T)=NBRC 108816(T)). An additional strain of the species is SAORIC-26.

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Year:  2012        PMID: 23148103     DOI: 10.1099/ijs.0.046318-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  9 in total

1.  Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes.

Authors:  Marina García-López; Jan P Meier-Kolthoff; Brian J Tindall; Sabine Gronow; Tanja Woyke; Nikos C Kyrpides; Richard L Hahnke; Markus Göker
Journal:  Front Microbiol       Date:  2019-09-23       Impact factor: 5.640

2.  Complete genome sequence of Rhodothermaceae bacterium RA with cellulolytic and xylanolytic activities.

Authors:  Kok Jun Liew; Seng Chong Teo; Mohd Shahir Shamsir; Rajesh Kumar Sani; Chun Shiong Chong; Kok-Gan Chan; Kian Mau Goh
Journal:  3 Biotech       Date:  2018-08-13       Impact factor: 2.406

3.  Genome Analysis of a New Rhodothermaceae Strain Isolated from a Hot Spring.

Authors:  Kian Mau Goh; Kok-Gan Chan; Soon Wee Lim; Kok Jun Liew; Chia Sing Chan; Mohd Shahir Shamsir; Robson Ee; Tan-Guan-Sheng Adrian
Journal:  Front Microbiol       Date:  2016-07-14       Impact factor: 5.640

4.  Genome-Based Taxonomic Classification of Bacteroidetes.

Authors:  Richard L Hahnke; Jan P Meier-Kolthoff; Marina García-López; Supratim Mukherjee; Marcel Huntemann; Natalia N Ivanova; Tanja Woyke; Nikos C Kyrpides; Hans-Peter Klenk; Markus Göker
Journal:  Front Microbiol       Date:  2016-12-20       Impact factor: 5.640

5.  The Saltpan Microbiome is Structured by Sediment Depth and Minimally Influenced by Variable Hydration.

Authors:  Eric A Weingarten; Lauren A Lawson; Colin R Jackson
Journal:  Microorganisms       Date:  2020-04-08

6.  Global Transcriptomic Responses of Roseithermus sacchariphilus Strain RA in Media Supplemented with Beechwood Xylan.

Authors:  Kok Jun Liew; Neil C Bruce; Rajesh Kumar Sani; Chun Shiong Chong; Amira Suriaty Yaakop; Mohd Shahir Shamsir; Kian Mau Goh
Journal:  Microorganisms       Date:  2020-06-29

7.  A Survey of Spontaneous Antibiotic-Resistant Mutants of the Halophilic, Thermophilic Bacterium Rhodothermus marinus.

Authors:  Sophia Silvia; Samantha A Donahue; Erin E Killeavy; Gerwald Jogl; Steven T Gregory
Journal:  Antibiotics (Basel)       Date:  2021-11-11

8.  Presence of a Haloarchaeal Halorhodopsin-Like Cl- Pump in Marine Bacteria.

Authors:  Yu Nakajima; Takashi Tsukamoto; Yohei Kumagai; Yoshitoshi Ogura; Tetsuya Hayashi; Jaeho Song; Takashi Kikukawa; Makoto Demura; Kazuhiro Kogure; Yuki Sudo; Susumu Yoshizawa
Journal:  Microbes Environ       Date:  2018-03-16       Impact factor: 2.912

9.  Bacterial and Archaeal Structural Diversity in Several Biodeterioration Patterns on the Limestone Walls of the Old Cathedral of Coimbra.

Authors:  Catarina Coelho; Nuno Mesquita; Inês Costa; Fabiana Soares; João Trovão; Helena Freitas; António Portugal; Igor Tiago
Journal:  Microorganisms       Date:  2021-03-30
  9 in total

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