Literature DB >> 23147798

Non-coding transcription SETs up regulation.

Swaminathan Venkatesh1, Jerry L Workman.   

Abstract

An abundance of long non-coding RNA (lncRNA) present in most species from yeast to human are involved in transcriptional regulation, dosage compensation and imprinting. This underscores the importance of lncRNA as functional RNA despite the fact that they do not produce proteins. Two recent papers in Cell have demonstrated that transcription of the non-conserved lncRNAs, but not the RNAs themselves, is necessary to introduce co-transcriptional regulatory histone marks to regulate gene expression.

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Year:  2012        PMID: 23147798      PMCID: PMC3587699          DOI: 10.1038/cr.2012.147

Source DB:  PubMed          Journal:  Cell Res        ISSN: 1001-0602            Impact factor:   25.617


  15 in total

1.  Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression.

Authors:  Brian D Strahl; Patrick A Grant; Scott D Briggs; Zu-Wen Sun; James R Bone; Jennifer A Caldwell; Sahana Mollah; Richard G Cook; Jeffrey Shabanowitz; Donald F Hunt; C David Allis
Journal:  Mol Cell Biol       Date:  2002-03       Impact factor: 4.272

2.  Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity.

Authors:  Huck Hui Ng; François Robert; Richard A Young; Kevin Struhl
Journal:  Mol Cell       Date:  2003-03       Impact factor: 17.970

3.  The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II.

Authors:  Bing Li; LeAnn Howe; Scott Anderson; John R Yates; Jerry L Workman
Journal:  J Biol Chem       Date:  2003-01-02       Impact factor: 5.157

4.  Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription.

Authors:  Michael J Carrozza; Bing Li; Laurence Florens; Tamaki Suganuma; Selene K Swanson; Kenneth K Lee; Wei-Jong Shia; Scott Anderson; John Yates; Michael P Washburn; Jerry L Workman
Journal:  Cell       Date:  2005-11-18       Impact factor: 41.582

5.  XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast.

Authors:  E L van Dijk; C L Chen; Y d'Aubenton-Carafa; S Gourvennec; M Kwapisz; V Roche; C Bertrand; M Silvain; P Legoix-Né; S Loeillet; A Nicolas; C Thermes; A Morillon
Journal:  Nature       Date:  2011-06-22       Impact factor: 49.962

6.  The specificity and topology of chromatin interaction pathways in yeast.

Authors:  Tineke L Lenstra; Joris J Benschop; Taesoo Kim; Julia M Schulze; Nathalie A C H Brabers; Thanasis Margaritis; Loes A L van de Pasch; Sebastiaan A A C van Heesch; Mariel O Brok; Marian J A Groot Koerkamp; Cheuk W Ko; Dik van Leenen; Katrin Sameith; Sander R van Hooff; Philip Lijnzaad; Patrick Kemmeren; Thomas Hentrich; Michael S Kobor; Stephen Buratowski; Frank C P Holstege
Journal:  Mol Cell       Date:  2011-05-20       Impact factor: 17.970

7.  Set2 methylation of histone H3 lysine 36 suppresses histone exchange on transcribed genes.

Authors:  Swaminathan Venkatesh; Michaela Smolle; Hua Li; Madelaine M Gogol; Malika Saint; Shambhu Kumar; Krishnamurthy Natarajan; Jerry L Workman
Journal:  Nature       Date:  2012-08-22       Impact factor: 49.962

8.  Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics.

Authors:  TaeSoo Kim; Zhenyu Xu; Sandra Clauder-Münster; Lars M Steinmetz; Stephen Buratowski
Journal:  Cell       Date:  2012-09-06       Impact factor: 41.582

9.  Bidirectional promoters generate pervasive transcription in yeast.

Authors:  Zhenyu Xu; Wu Wei; Julien Gagneur; Fabiana Perocchi; Sandra Clauder-Münster; Jurgi Camblong; Elisa Guffanti; Françoise Stutz; Wolfgang Huber; Lars M Steinmetz
Journal:  Nature       Date:  2009-01-25       Impact factor: 49.962

10.  Updating the CTD Story: From Tail to Epic.

Authors:  Bartlomiej Bartkowiak; April L Mackellar; Arno L Greenleaf
Journal:  Genet Res Int       Date:  2011-10-15
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  1 in total

1.  Long-range regulators of the lncRNA HOTAIR enhance its prognostic potential in breast cancer.

Authors:  Michael J G Milevskiy; Fares Al-Ejeh; Jodi M Saunus; Korinne S Northwood; Peter J Bailey; Joshua A Betts; Amy E McCart Reed; Kenneth P Nephew; Andrew Stone; Julia M W Gee; Dennis H Dowhan; Eloise Dray; Annette M Shewan; Juliet D French; Stacey L Edwards; Susan J Clark; Sunil R Lakhani; Melissa A Brown
Journal:  Hum Mol Genet       Date:  2016-07-04       Impact factor: 6.150

  1 in total

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