Literature DB >> 23145792

Rapid protein-ligand costructures from sparse NOE data.

Dipen M Shah1, Eiso A B, Tammo Diercks, Mathias A S Hass, Nico A J van Nuland, Gregg Siegal.   

Abstract

An efficient way to rapidly generate protein-ligand costructures based on solution-NMR using sparse NOE data combined with selective isotope labeling is presented. A docked model of the 27 kDa N-terminal ATPase domain of Hsp90 bound to a small molecule ligand was generated using only 21 intermolecular NOEs, which uniquely defined both the binding site and the orientation of the ligand. The approach can prove valuable for the early stages of fragment-based drug discovery.

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Year:  2012        PMID: 23145792     DOI: 10.1021/jm301396d

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  7 in total

1.  Protein-ligand structure guided by backbone and side-chain proton chemical shift perturbations.

Authors:  Clémentine Aguirre; Tim ten Brink; Olivier Cala; Jean-François Guichou; Isabelle Krimm
Journal:  J Biomol NMR       Date:  2014-09-26       Impact factor: 2.835

2.  Determination of ligand binding modes in weak protein-ligand complexes using sparse NMR data.

Authors:  Biswaranjan Mohanty; Martin L Williams; Bradley C Doak; Mansha Vazirani; Olga Ilyichova; Geqing Wang; Wolfgang Bermel; Jamie S Simpson; David K Chalmers; Glenn F King; Mehdi Mobli; Martin J Scanlon
Journal:  J Biomol NMR       Date:  2016-10-24       Impact factor: 2.835

3.  Comparing binding modes of analogous fragments using NMR in fragment-based drug design: application to PRDX5.

Authors:  Clémentine Aguirre; Tim ten Brink; Jean-François Guichou; Olivier Cala; Isabelle Krimm
Journal:  PLoS One       Date:  2014-07-15       Impact factor: 3.240

4.  Methyl group assignment using pseudocontact shifts with PARAssign.

Authors:  Mathilde Lescanne; Simon P Skinner; Anneloes Blok; Monika Timmer; Linda Cerofolini; Marco Fragai; Claudio Luchinat; Marcellus Ubbink
Journal:  J Biomol NMR       Date:  2017-11-27       Impact factor: 2.835

5.  Fragment library screening identifies hits that bind to the non-catalytic surface of Pseudomonas aeruginosa DsbA1.

Authors:  Biswaranjan Mohanty; Kieran Rimmer; Róisín M McMahon; Stephen J Headey; Mansha Vazirani; Stephen R Shouldice; Mathieu Coinçon; Stephanie Tay; Craig J Morton; Jamie S Simpson; Jennifer L Martin; Martin J Scanlon
Journal:  PLoS One       Date:  2017-03-27       Impact factor: 3.240

6.  Selective Binding of Small Molecules to Vibrio cholerae DsbA Offers a Starting Point for the Design of Novel Antibacterials.

Authors:  Geqing Wang; Biswaranjan Mohanty; Martin L Williams; Bradley C Doak; Rabeb Dhouib; Makrina Totsika; Róisín M McMahon; Gaurav Sharma; Dan Zheng; Matthew R Bentley; Yanni Ka-Yan Chin; James Horne; David K Chalmers; Begoña Heras; Martin J Scanlon
Journal:  ChemMedChem       Date:  2022-01-27       Impact factor: 3.540

7.  Automatic structure-based NMR methyl resonance assignment in large proteins.

Authors:  Iva Pritišanac; Julia M Würz; T Reid Alderson; Peter Güntert
Journal:  Nat Commun       Date:  2019-10-29       Impact factor: 14.919

  7 in total

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