Literature DB >> 23144416

Complete genome sequence of the pyrene-degrading bacterium Cycloclasticus sp. strain P1.

Qiliang Lai1, Weiwei Li, Baojiang Wang, Zhiwei Yu, Zongze Shao.   

Abstract

Cycloclasticus sp. strain P1 was isolated from deep-sea sediments of the Pacific Ocean and characterized as a unique bacterium in the degradation of pyrene, a four-ring polycyclic aromatic hydrocarbon (PAH). Here we report the complete genome of P1 and genes associated with PAH degradation.

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Year:  2012        PMID： 23144416      PMCID： PMC3497472          DOI： 10.1128/JB.01837-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  7 in total

1.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

2.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  A pyrene-degrading consortium from deep-sea sediment of the West Pacific and its key member Cycloclasticus sp. P1.

Authors:  Baojiang Wang; Qiliang Lai; Zhisong Cui; Tianfeng Tan; Zongze Shao
Journal:  Environ Microbiol       Date:  2008-04-21       Impact factor: 5.491

5.  Molecular characterization and substrate preference of a polycyclic aromatic hydrocarbon dioxygenase from Cycloclasticus sp. strain A5.

Authors:  Yuki Kasai; Kazutoshi Shindo; Shigeaki Harayama; Norihiko Misawa
Journal:  Appl Environ Microbiol       Date:  2003-11       Impact factor: 4.792

6.  Fast and accurate long-read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2010-01-15       Impact factor: 6.937

7.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  7 in total
  9 in total

1.  Metabolic and spatio-taxonomic response of uncultivated seafloor bacteria following the Deepwater Horizon oil spill.

Authors:  K M Handley; Y M Piceno; P Hu; L M Tom; O U Mason; G L Andersen; J K Jansson; J A Gilbert
Journal:  ISME J       Date:  2017-08-04       Impact factor: 10.302

2.  Polycyclic Aromatic Hydrocarbon (PAH) Degradation Pathways of the Obligate Marine PAH Degrader Cycloclasticus sp. Strain P1.

Authors:  Wanpeng Wang; Lin Wang; Zongze Shao
Journal:  Appl Environ Microbiol       Date:  2018-10-17       Impact factor: 4.792

3.  Characterisation of hydrocarbon degradation, biosurfactant production, and biofilm formation in Serratia sp. Tan611: a new strain isolated from industrially contaminated environment in Algeria.

Authors:  Annela Semai; Frédéric Plewniak; Armelle Charrié-Duhaut; Amalia Sayeh; Lisa Gil; Céline Vandecasteele; Céline Lopez-Roques; Emmanuelle Leize-Wagner; Farid Bensalah; Philippe N Bertin
Journal:  Antonie Van Leeuwenhoek       Date:  2021-02-15       Impact factor: 2.271

4.  Diverse, rare microbial taxa responded to the Deepwater Horizon deep-sea hydrocarbon plume.

Authors:  Sara Kleindienst; Sharon Grim; Mitchell Sogin; Annalisa Bracco; Melitza Crespo-Medina; Samantha B Joye
Journal:  ISME J       Date:  2015-07-31       Impact factor: 10.302

5.  Microbial communities related to biodegradation of dispersed Macondo oil at low seawater temperature with Norwegian coastal seawater.

Authors:  Odd G Brakstad; Mimmi Throne-Holst; Roman Netzer; Donald M Stoeckel; Ronald M Atlas
Journal:  Microb Biotechnol       Date:  2015-07-16       Impact factor: 5.813

6.  Molecular evolution of cytochrome bd oxidases across proteobacterial genomes.

Authors:  Mauro Degli Esposti; Tania Rosas-Pérez; Luis Eduardo Servín-Garcidueñas; Luis Manuel Bolaños; Monica Rosenblueth; Esperanza Martínez-Romero
Journal:  Genome Biol Evol       Date:  2015-02-16       Impact factor: 3.416

7.  The genome analysis of Oleiphilus messinensis ME102 (DSM 13489T) reveals backgrounds of its obligate alkane-devouring marine lifestyle.

Authors:  Stepan V Toshchakov; Alexei A Korzhenkov; Tatyana N Chernikova; Manuel Ferrer; Olga V Golyshina; Michail M Yakimov; Peter N Golyshin
Journal:  Mar Genomics       Date:  2017-08-10       Impact factor: 1.710

8.  Pseudomonads Rule Degradation of Polyaromatic Hydrocarbons in Aerated Sediment.

Authors:  Jiri Wald; Miluse Hroudova; Jan Jansa; Blanka Vrchotova; Tomas Macek; Ondrej Uhlik
Journal:  Front Microbiol       Date:  2015-11-19       Impact factor: 5.640

9.  Functional characterization of diverse ring-hydroxylating oxygenases and induction of complex aromatic catabolic gene clusters in Sphingobium sp. PNB.

Authors:  Pratick Khara; Madhumita Roy; Joydeep Chakraborty; Debajyoti Ghosal; Tapan K Dutta
Journal:  FEBS Open Bio       Date:  2014-03-07       Impact factor: 2.693
  9 in total

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