Literature DB >> 23144410

Genome sequence of the biocontrol agent Microbacterium barkeri strain 2011-R4.

Jian Liu1, Qing Zhou, Muhammad Ibrahim, He Liu, Gulei Jin, Bo Zhu, Guanlin Xie.   

Abstract

Microbacterium barkeri strain 2011-R4 is a Gram-positive epiphyte which has been confirmed as a biocontrol agent against several plant pathogens in our previous studies. Here, we present the draft genome sequence of this strain, which was isolated from the rice rhizosphere in Tonglu city, Zhejiang province, China.

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Year:  2012        PMID： 23144410      PMCID： PMC3497549          DOI： 10.1128/JB.01468-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  14 in total

1.  GenDB--an open source genome annotation system for prokaryote genomes.

Authors:  Folker Meyer; Alexander Goesmann; Alice C McHardy; Daniela Bartels; Thomas Bekel; Jörn Clausen; Jörn Kalinowski; Burkhard Linke; Oliver Rupp; Robert Giegerich; Alfred Pühler
Journal:  Nucleic Acids Res       Date:  2003-04-15       Impact factor: 16.971

2.  IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth.

Authors:  Yu Peng; Henry C M Leung; S M Yiu; Francis Y L Chin
Journal:  Bioinformatics       Date:  2012-04-11       Impact factor: 6.937

3.  Phenotypic and genetic diversity of rice seed-associated bacteria and their role in pathogenicity and biological control.

Authors:  B Cottyn; J Debode; E Regalado; T W Mew; J Swings
Journal:  J Appl Microbiol       Date:  2009-03-26       Impact factor: 3.772

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  Draft genome sequence for Microbacterium laevaniformans strain OR221, a bacterium tolerant to metals, nitrate, and low pH.

Authors:  Steven D Brown; Anthony V Palumbo; Nicolai Panikov; Thilini Ariyawansa; Dawn M Klingeman; Courtney M Johnson; Miriam L Land; Sagar M Utturkar; Slava S Epstein
Journal:  J Bacteriol       Date:  2012-06       Impact factor: 3.490

6.  A novel bacterial pathogen, Microbacterium nematophilum, induces morphological change in the nematode C. elegans.

Authors:  J Hodgkin; P E Kuwabara; B Corneliussen
Journal:  Curr Biol       Date:  2000 Dec 14-28       Impact factor: 10.834

7.  Production of Fusarium verticillioides biocontrol agents, Bacillus amyloliquefaciens and Microbacterium oleovorans, using different growth media: evaluation of biomass and viability after freeze-drying.

Authors:  M Sartori; A Nesci; M Etcheverry
Journal:  Food Addit Contam Part A Chem Anal Control Expo Risk Assess       Date:  2012

8.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

9.  Bacterial populations associated with rice seed in the tropical environment.

Authors:  B Cottyn; E Regalado; B Lanoot; M De Cleene; T W Mew; J Swings
Journal:  Phytopathology       Date:  2001-03       Impact factor: 4.025

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
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  4 in total

1.  Impact of clay mineral, wood sawdust or root organic matter on the bacterial and fungal community structures in two aged PAH-contaminated soils.

Authors:  Aurélie Cébron; Thierry Beguiristain; Jeanne Bongoua-Devisme; Jérémie Denonfoux; Pierre Faure; Catherine Lorgeoux; Stéphanie Ouvrard; Nicolas Parisot; Pierre Peyret; Corinne Leyval
Journal:  Environ Sci Pollut Res Int       Date:  2015-01-25       Impact factor: 4.223

2.  Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Changes.

Authors:  Jigar S Desai; Ryan C Sartor; Lovely Mae Lawas; S V Krishna Jagadish; Colleen J Doherty
Journal:  Sci Rep       Date:  2017-12-08       Impact factor: 4.379

3.  Draft Genome Sequence of Microbacterium sp. Strain UCD-TDU (Phylum Actinobacteria).

Authors:  Zachary A Bendiks; Jenna M Lang; Aaron E Darling; Jonathan A Eisen; David A Coil
Journal:  Genome Announc       Date:  2013-03-21

4.  Genome-scale metabolic models of Microbacterium species isolated from a high altitude desert environment.

Authors:  Dinka Mandakovic; Ángela Cintolesi; Jonathan Maldonado; Sebastián N Mendoza; Méziane Aïte; Alexis Gaete; Francisco Saitua; Miguel Allende; Verónica Cambiazo; Anne Siegel; Alejandro Maass; Mauricio González; Mauricio Latorre
Journal:  Sci Rep       Date:  2020-03-27       Impact factor: 4.379
  4 in total

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