Literature DB >> 23144392

Draft genome sequence of Lactobacillus casei W56.

Kerstin Hochwind1, Thomas Weinmaier, Michael Schmid, Saskia van Hemert, Anton Hartmann, Thomas Rattei, Michael Rothballer.   

Abstract

We announce the draft genome sequence of Lactobacillus casei W56 in one contig. This strain shows immunomodulatory and probiotic properties. The strain is also an ingredient of commercially available probiotic products.

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Year:  2012        PMID： 23144392      PMCID： PMC3497524          DOI： 10.1128/JB.01386-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  15 in total

1.  The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.

Authors:  Brigitte Boeckmann; Amos Bairoch; Rolf Apweiler; Marie-Claude Blatter; Anne Estreicher; Elisabeth Gasteiger; Maria J Martin; Karine Michoud; Claire O'Donovan; Isabelle Phan; Sandrine Pilbout; Michel Schneider
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

2.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

3.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

4.  GeneMark.hmm: new solutions for gene finding.

Authors:  A V Lukashin; M Borodovsky
Journal:  Nucleic Acids Res       Date:  1998-02-15       Impact factor: 16.971

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  CRITICA: coding region identification tool invoking comparative analysis.

Authors:  J H Badger; G J Olsen
Journal:  Mol Biol Evol       Date:  1999-04       Impact factor: 16.240

7.  Design of a multispecies probiotic mixture to prevent infectious complications in critically ill patients.

Authors:  Harro M Timmerman; Laetitia E M Niers; Ben U Ridwan; Catherina J M Koning; Linda Mulder; Louis M A Akkermans; Frans M Rombouts; Ger T Rijkers
Journal:  Clin Nutr       Date:  2007-06-04       Impact factor: 7.324

8.  InterPro in 2011: new developments in the family and domain prediction database.

Authors:  Sarah Hunter; Philip Jones; Alex Mitchell; Rolf Apweiler; Teresa K Attwood; Alex Bateman; Thomas Bernard; David Binns; Peer Bork; Sarah Burge; Edouard de Castro; Penny Coggill; Matthew Corbett; Ujjwal Das; Louise Daugherty; Lauranne Duquenne; Robert D Finn; Matthew Fraser; Julian Gough; Daniel Haft; Nicolas Hulo; Daniel Kahn; Elizabeth Kelly; Ivica Letunic; David Lonsdale; Rodrigo Lopez; Martin Madera; John Maslen; Craig McAnulla; Jennifer McDowall; Conor McMenamin; Huaiyu Mi; Prudence Mutowo-Muellenet; Nicola Mulder; Darren Natale; Christine Orengo; Sebastien Pesseat; Marco Punta; Antony F Quinn; Catherine Rivoire; Amaia Sangrador-Vegas; Jeremy D Selengut; Christian J A Sigrist; Maxim Scheremetjew; John Tate; Manjulapramila Thimmajanarthanan; Paul D Thomas; Cathy H Wu; Corin Yeats; Siew-Yit Yong
Journal:  Nucleic Acids Res       Date:  2011-11-16       Impact factor: 16.971

9.  Rfam: annotating non-coding RNAs in complete genomes.

Authors:  Sam Griffiths-Jones; Simon Moxon; Mhairi Marshall; Ajay Khanna; Sean R Eddy; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
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  8 in total

1.  Comparative genomic and functional analysis of Lactobacillus casei and Lactobacillus rhamnosus strains marketed as probiotics.

Authors:  François P Douillard; Angela Ribbera; Hanna M Järvinen; Ravi Kant; Taija E Pietilä; Cinzia Randazzo; Lars Paulin; Pia K Laine; Cinzia Caggia; Ingemar von Ossowski; Justus Reunanen; Reetta Satokari; Seppo Salminen; Airi Palva; Willem M de Vos
Journal:  Appl Environ Microbiol       Date:  2013-01-11       Impact factor: 4.792

2.  Utilization of D-ribitol by Lactobacillus casei BL23 requires a mannose-type phosphotransferase system and three catabolic enzymes.

Authors:  A Bourand; M J Yebra; G Boël; A Mazé; J Deutscher
Journal:  J Bacteriol       Date:  2013-04-05       Impact factor: 3.490

3.  Complete Genome Sequence of the Probiotic Strain Lactobacillus casei (Formerly Lactobacillus paracasei) LOCK919.

Authors:  Anna Koryszewska-Baginska; Tamara Aleksandrzak-Piekarczyk; Jacek Bardowski
Journal:  Genome Announc       Date:  2013-09-26

4.  Lactobacilli Isolated From Wild Boar (Sus scrofa) Antagonize Mycobacterium bovis Bacille Calmette-Guerin (BCG) in a Species-Dependent Manner.

Authors:  Maria Bravo; Theo Combes; Fernando O Martinez; Rosario Cerrato; Joaquín Rey; Waldo Garcia-Jimenez; Pedro Fernandez-Llario; David Risco; Jorge Gutierrez-Merino
Journal:  Front Microbiol       Date:  2019-07-30       Impact factor: 5.640

5.  NADH peroxidase plays a crucial role in consuming H2O2 in Lactobacillus casei IGM394.

Authors:  Shingo Naraki; Shizunobu Igimi; Yasuko Sasaki
Journal:  Biosci Microbiota Food Health       Date:  2019-12-25

6.  Comparative genome analysis of Lactobacillus casei strains isolated from Actimel and Yakult products reveals marked similarities and points to a common origin.

Authors:  François P Douillard; Ravi Kant; Jarmo Ritari; Lars Paulin; Airi Palva; Willem M de Vos
Journal:  Microb Biotechnol       Date:  2013-07-01       Impact factor: 5.813

7.  Comparative genomic analysis of the multispecies probiotic-marketed product VSL#3.

Authors:  François P Douillard; Diego Mora; Robyn T Eijlander; Michiel Wels; Willem M de Vos
Journal:  PLoS One       Date:  2018-02-16       Impact factor: 3.240

8.  Proteomic analysis of Lactobacillus casei GCRL163 cell-free extracts reveals a SecB homolog and other biomarkers of prolonged heat stress.

Authors:  Kayode T Adu; Richard Wilson; David S Nichols; Anthony L Baker; John P Bowman; Margaret L Britz
Journal:  PLoS One       Date:  2018-10-25       Impact factor: 3.240
  8 in total

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