Literature DB >> 23144379

Draft genome sequence of the cyanide-utilizing bacterium Pseudomonas fluorescens strain NCIMB 11764.

Claudia A Vilo1, Michael J Benedik, Daniel A Kunz, Qunfeng Dong.   

Abstract

We report here the 6.97-Mb draft genome sequence of Pseudomonas fluorescens strain NCIMB 11764, which is capable of growth on cyanide as the sole nitrogen source. The draft genome sequence allowed the discovery of several genes implicated in enzymatic cyanide turnover and provided additional information contributing to a better understanding of this organism's unique cyanotrophic ability. This is the first sequenced genome of a cyanide-assimilating bacterium.

Entities:  

Mesh：

Substances：

Year:  2012        PMID： 23144379      PMCID： PMC3497540          DOI： 10.1128/JB.01670-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  13 in total

1.  Bacterial cyanide oxygenase is a suite of enzymes catalyzing the scavenging and adventitious utilization of cyanide as a nitrogenous growth substrate.

Authors:  Ruby F Fernandez; Daniel A Kunz
Journal:  J Bacteriol       Date:  2005-09       Impact factor: 3.490

2.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

Review 3.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

Review 4.  Pseudomonas genomes: diverse and adaptable.

Authors:  Mark W Silby; Craig Winstanley; Scott A C Godfrey; Stuart B Levy; Robert W Jackson
Journal:  FEMS Microbiol Rev       Date:  2011-03-25       Impact factor: 16.408

5.  Utilization of cyanide as nitrogenous substrate by Pseudomonas fluorescens NCIMB 11764: evidence for multiple pathways of metabolic conversion.

Authors:  D A Kunz; O Nagappan; J Silva-Avalos; G T Delong
Journal:  Appl Environ Microbiol       Date:  1992-06       Impact factor: 4.792

6.  Enzymatic assimilation of cyanide via pterin-dependent oxygenolytic cleavage to ammonia and formate in Pseudomonas fluorescens NCIMB 11764.

Authors:  Ruby F Fernandez; Elena Dolghih; Daniel A Kunz
Journal:  Appl Environ Microbiol       Date:  2004-01       Impact factor: 4.792

7.  Isolation and growth of a Pseudomonas species that utilizes cyanide as a source of nitrogen.

Authors:  R Harris; C J Knowles
Journal:  J Gen Microbiol       Date:  1983-04

8.  The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes.

Authors:  Ross Overbeek; Tadhg Begley; Ralph M Butler; Jomuna V Choudhuri; Han-Yu Chuang; Matthew Cohoon; Valérie de Crécy-Lagard; Naryttza Diaz; Terry Disz; Robert Edwards; Michael Fonstein; Ed D Frank; Svetlana Gerdes; Elizabeth M Glass; Alexander Goesmann; Andrew Hanson; Dirk Iwata-Reuyl; Roy Jensen; Neema Jamshidi; Lutz Krause; Michael Kubal; Niels Larsen; Burkhard Linke; Alice C McHardy; Folker Meyer; Heiko Neuweger; Gary Olsen; Robert Olson; Andrei Osterman; Vasiliy Portnoy; Gordon D Pusch; Dmitry A Rodionov; Christian Rückert; Jason Steiner; Rick Stevens; Ines Thiele; Olga Vassieva; Yuzhen Ye; Olga Zagnitko; Veronika Vonstein
Journal:  Nucleic Acids Res       Date:  2005-10-07       Impact factor: 16.971

Review 9.  The nitrilase superfamily: classification, structure and function.

Authors:  H C Pace; C Brenner
Journal:  Genome Biol       Date:  2001-01-15       Impact factor: 13.583

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
View more
  3 in total

Review 1.  Microbiology, genomics, and clinical significance of the Pseudomonas fluorescens species complex, an unappreciated colonizer of humans.

Authors:  Brittan S Scales; Robert P Dickson; John J LiPuma; Gary B Huffnagle
Journal:  Clin Microbiol Rev       Date:  2014-10       Impact factor: 26.132

2.  Complete Genome Sequence of a Cyanotroph, Pseudomonas fluorescens NCIMB 11764, Employing Single-Molecule Real-Time Technology.

Authors:  Lauren B Jones; Daniel A Kunz
Journal:  Genome Announc       Date:  2015-10-01

3.  Plant growth promotion induced by phosphate solubilizing endophytic Pseudomonas isolates.

Authors:  Nicholas Oteino; Richard D Lally; Samuel Kiwanuka; Andrew Lloyd; David Ryan; Kieran J Germaine; David N Dowling
Journal:  Front Microbiol       Date:  2015-07-22       Impact factor: 5.640
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.