Literature DB >> 23144376

Draft genome sequences of Actinomyces timonensis strain 7400942T and its prophage.

Aurore Gorlas1, Grégory Gimenez, Didier Raoult, Véronique Roux.   

Abstract

A draft genome sequence of Actinomyces timonensis, an anaerobic bacterium isolated from a human clinical osteoarticular sample, is described here. CRISPR-associated proteins, insertion sequence, and toxin-antitoxin loci were found on the genome. A new virus or provirus, AT-1, was characterized.

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Year:  2012        PMID： 23144376      PMCID： PMC3497545          DOI： 10.1128/JB.01730-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  15 in total

1.  Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome.

Authors:  David T Pride; Julia Salzman; Matthew Haynes; Forest Rohwer; Clara Davis-Long; Richard A White; Peter Loomer; Gary C Armitage; David A Relman
Journal:  ISME J       Date:  2011-12-08       Impact factor: 10.302

2.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

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Authors:  R L Tatusov; M Y Galperin; D A Natale; E V Koonin
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

4.  Prophage Finder: a prophage loci prediction tool for prokaryotic genome sequences.

Authors:  M Bose; Robert D Barber
Journal:  In Silico Biol       Date:  2006

5.  Isolation of Actinomyces bacteriophage from human dental plaque.

Authors:  C A Tylenda; C Calvert; P E Kolenbrander; A Tylenda
Journal:  Infect Immun       Date:  1985-07       Impact factor: 3.441

6.  Isolation of a bacteriophage for actinomyces viscosus.

Authors:  A L Delisle; R K Nauman; G E Minah
Journal:  Infect Immun       Date:  1978-04       Impact factor: 3.441

7.  Isolation and expression of the lysis genes of Actinomyces naeslundii phage Av-1.

Authors:  Allan L Delisle; Gerard J Barcak; Ming Guo
Journal:  Appl Environ Microbiol       Date:  2006-02       Impact factor: 4.792

8.  Actinomyces timonensis sp. nov., isolated from a human clinical osteo-articular sample.

Authors:  Aurélie Renvoise; Didier Raoult; Véronique Roux
Journal:  Int J Syst Evol Microbiol       Date:  2009-08-14       Impact factor: 2.747

9.  UniProt Knowledgebase: a hub of integrated protein data.

Authors:  Michele Magrane
Journal:  Database (Oxford)       Date:  2011-03-29       Impact factor: 3.451

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
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